PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056306-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 116aa    MW: 13344.2 Da    PI: 10.4502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056306-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-152676155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++kG+r +k +g+W + Ir p++   r +++lg++ tae+Aa+a++aa  +l+g
  PSME_00056306-RA 26 PQFKGIRKRK-WGSWGSAIRIPKT---REKIWLGSYKTAEQAARAYDAAVYYLKG 76
                      689****999.**********965...4***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.42E-222686No hitNo description
PfamPF008474.7E-82676IPR001471AP2/ERF domain
SMARTSM003805.6E-252790IPR001471AP2/ERF domain
PROSITE profilePS5103220.0472784IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-172786IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-262786IPR001471AP2/ERF domain
PRINTSPR003672.1E-82839IPR001471AP2/ERF domain
PRINTSPR003672.1E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MEKLPDSEEH HAHAVLPYQY CGEKRPQFKG IRKRKWGSWG SAIRIPKTRE KIWLGSYKTA  60
EQAARAYDAA VYYLKGPNAK FNFPDSIPSI PSAFSLSRRQ IQLAASRYAR DELRST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-132184872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126865.17e-34PREDICTED: ethylene-responsive transcription factor ERF016-like
RefseqXP_013659029.12e-33ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5911e-32ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A0D6QSF13e-39A0A0D6QSF1_ARACU; Uncharacterized protein
TrEMBLH9V0V05e-40H9V0V0_PINTA; Uncharacterized protein (Fragment)
STRINGBra020162.1-P2e-33(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-35ERF family protein