PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056282-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 317aa    MW: 35287.9 Da    PI: 5.5733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056282-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-074282348
                      -HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                      +W+ Ia+ +  gRt++++k++w+++l
  PSME_00056282-RA  4 RWSVIASQLV-GRTDNEIKNYWNTHL 28
                      4*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.378132IPR017930Myb domain
SuperFamilySSF466892.04E-7337IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-12441IPR009057Homeodomain-like
CDDcd001671.75E-5428No hitNo description
PfamPF002491.3E-5428IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNFRWSVIAS QLVGRTDNEI KNYWNTHLRK RLLKMGIDPS THEPKTEGNS TALRGFESLA  60
LTRHKAQWEN ARLEAEARLS RESLLLYSNL NAGYSTNINT VELSTMPDDN NAPTDYFLKV  120
WSSEAGKVFR KESSSCKITN KSSNNSGHMT FDLNHHQNGG LEDQVLSCQI RKSSRSSGSA  180
SASLYCTSTQ QSCDKDNGSQ RCNSASAEWT EDCSVKTVEV LPCFADHMTM GQTEHNVHEA  240
SFSSEELGPA NVQYTCFSEL LMDFPAINDS NSTGCMIPEL TTSFQQQSAL PWPELNLEDV  300
KDYWNNASVT ARASAHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-33myb domain protein 17