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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00056019-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | BES1 | ||||||||
Protein Properties | Length: 404aa MW: 45274.6 Da PI: 8.2654 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 134.2 | 1.4e-41 | 52 | 166 | 5 | 117 |
DUF822 5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas.aspesslq 95 r+p++ ErE+n+rRER RR +aaki+aGLRa+Gny+lpk+aD neVlkALc+eAGw v++DGt yrk + + a++s + +ss PSME_00056019-RA 52 RNPSANEREKNRRRERMRRSVAAKIFAGLRAHGNYRLPKHADHNEVLKALCNEAGWHVQEDGTIYRKNRAEMkGPSLLAVESPGkGTSCSSNY 144 89****************************************************************998888544444444444244444443 PP DUF822 96 sslkssalaspvesysaspkss 117 + +++ s ++s +s ++ PSME_00056019-RA 145 AEQGNNTAWSAITSNVPSSRAF 166 3444444444444444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.3E-39 | 52 | 167 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MGWEGVQEEA MRSRSSSSSK GFAGRGCIKT TSGPWVVRRA SSKWGCETLL LRNPSANERE 60 KNRRRERMRR SVAAKIFAGL RAHGNYRLPK HADHNEVLKA LCNEAGWHVQ EDGTIYRKNR 120 AEMKGPSLLA VESPGKGTSC SSNYAEQGNN TAWSAITSNV PSSRAFEFLP EGSYENGFES 180 LSKTYGDHEN HNETSLAPII MNNKYPLHES SCMPTYDSYK SAGSLKMMKG IDLQLSVIDS 240 HGQSLVELRD RGLQLGFCNE HVEYSRRQGL RPLIPEEPDI AALSSSPEPI NAQTNLSIQY 300 GEQNLKWMVV TDQNKQGSQR FGFQWTEERS HKHLSHDDIS QFEGNNTRRE IPTVINFFCC 360 NEPQNPTVIR KCEWTNAQDV DGLALSLCSA SSLQRAKQSV KVTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-16 | 52 | 125 | 372 | 445 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-16 | 52 | 125 | 372 | 445 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-16 | 52 | 125 | 372 | 445 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-16 | 52 | 125 | 372 | 445 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 3e-20 | BES1 family protein |