PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054958-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 219aa    MW: 23870 Da    PI: 6.8278
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054958-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.3e-3971081101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+k+Cv+apyf++++ +++fa+vhk+FGasnv+kll ++p  er +a++++ yeA+ar+rdPvyG+v++i +lqqq+++l+a
  PSME_00054958-RA   7 PCGACKFLRRKCVKGCVFAPYFASDEgAEHFAAVHKIFGASNVSKLLLHIPIPERCEAVATISYEAQARLRDPVYGCVAHIYALQQQVASLQA 99 
                       7**********************99979***************************************************************** PP

            DUF260  93 elallkeel 101
                       e+  ++++l
  PSME_00054958-RA 100 EMTFVQAQL 108
                       ***999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2726108IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-387105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNTEGAPCGA CKFLRRKCVK GCVFAPYFAS DEGAEHFAAV HKIFGASNVS KLLLHIPIPE  60
RCEAVATISY EAQARLRDPV YGCVAHIYAL QQQVASLQAE MTFVQAQLAS RVAFGAASTS  120
MNHPHMYSSS NSQHPHQFPA QLSLPCHPIP QPYNAFLSSV KEENVCGSAS SIDSEFCESP  180
SYTSSPQMKV LQRCRYWEEN GGEDGGDLQA LAHALLMRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3651089111LOB family transfactor Ramosa2.1
5ly0_B1e-3651089111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1228010.0BT122801.1 Picea sitchensis clone WS0461_G07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381331.13e-58LOB domain-containing protein 29-like
RefseqXP_024381332.13e-58LOB domain-containing protein 29-like
SwissprotQ9M2J72e-55LBD29_ARATH; LOB domain-containing protein 29
TrEMBLD5A9D31e-124D5A9D3_PICSI; Uncharacterized protein
STRINGPP1S261_2V6.15e-56(Physcomitrella patens)
STRINGXP_004136784.14e-56(Cucumis sativus)
STRINGXP_004159662.14e-56(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.19e-58lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Gupta A,Singh M,Laxmi A
    Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
    Plant Physiol., 2015. 168(1): p. 307-20
    [PMID:25810094]
  2. Porco S, et al.
    Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
    Development, 2016. 143(18): p. 3340-9
    [PMID:27578783]
  3. Lee K,Seo PJ
    High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
    Planta, 2017. 246(4): p. 797-802
    [PMID:28766014]
  4. Xu C,Cao H,Xu E,Zhang S,Hu Y
    Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation.
    Plant Cell Physiol., 2018. 59(4): p. 744-755
    [PMID:29121271]
  5. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]