PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00053679-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

BES1

Protein Properties

Length: 277aa MW: 30040.7 Da PI: 7.6772

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053679-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	153.3	1.9e-47	6	88	5	87
DUF822 5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas 87 r p+wkErEnnk+RERrRRaiaaki++GLR +Gnyklpk++DnneVlkALc+eAGwvve+DG y+kg++p e ++ + ++ PSME_00053679-RA 6 RLPNWKERENNKKRERRRRAIAAKIFTGLRLYGNYKLPKHCDNNEVLKALCAEAGWVVEEDGSAYKKGMRPSECMNGVSLGNN 88 889*********************************************************************77776654444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.5E-44	6	96	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MSLVNRLPNW KERENNKKRE RRRRAIAAKI FTGLRLYGNY KLPKHCDNNE VLKALCAEAG 60 WVVEEDGSAY KKGMRPSECM NGVSLGNNTS CGLSENGSLI PWLKDLGSSG GSASDGLQSR 120 SCSEPVTPPL SSPTTINSSS AIPYNIKREC YKDTSDGSQG GFFNSVMWPP MQLPHQSAFS 180 AFNSQIDPAP LVRIFADQAC GIGAVYHDCI NNSKADSAGA DSHSAIGSEN NPVQKMTMSS 240 GLSAWEGEKL HDSGRDELEL TLGCSSLSKT RVPRFEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	9e-22	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	9e-22	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	9e-22	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	9e-22	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT111926	1e-91	BT111926.1 Picea glauca clone GQ03307_L18 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	3e-28	BES1/BZR1 homolog 4