 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00053192-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 307aa MW: 34518.2 Da PI: 9.5712 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00053192-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.5 | 2.2e-52 | 15 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelv +yLkkkv++++l++ ++i ++d+yk++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nr++ sgyWkatg+dk+++
PSME_00053192-RA 15 LPPGFRFHPTDEELVIHYLKKKVSSTPLPA-SIIGDIDLYKHDPWDLPSKACFGEQEWYFFSPRDRKYPNGARPNRSAGSGYWKATGTDKPIV 106
79****************************.89***************8777899************************************** PP
NAM 94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
k ++e+vg+kk+Lvfykgr kg kt+W+mheyrl
PSME_00053192-RA 107 IKsrckSSEKVGVKKSLVFYKGRPLKGLKTNWIMHEYRL 145
9988888889***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MEGMAFQQQQ VVSQLPPGFR FHPTDEELVI HYLKKKVSST PLPASIIGDI DLYKHDPWDL 60
PSKACFGEQE WYFFSPRDRK YPNGARPNRS AGSGYWKATG TDKPIVIKSR CKSSEKVGVK 120
KSLVFYKGRP LKGLKTNWIM HEYRLAETMP TGKGKGSMRL DDWVLCRIYK KVSHSSRAVS 180
CSELELAAPS PVDVQQNPAV PTFGSFSRLL QNEGPFMESF LSHDMSGSNV AHSHMEPSSS 240
FQAVPKQQCK LNSSDTRHHM SMSMGFNGDE ASAAYAAKRQ NSQNPSPSLY LQSSNPYLAV 300
PYQQYMY
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 6e-71 | 4 | 177 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 6e-71 | 4 | 177 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 6e-71 | 4 | 177 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 6e-71 | 4 | 177 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 6e-71 | 4 | 177 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 6e-71 | 4 | 177 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 6e-71 | 4 | 177 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 6e-71 | 4 | 177 | 7 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
