PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB

Protein Properties

Length: 289aa MW: 32948.5 Da PI: 5.4614

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053156-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l ++ ++G g+W+ a+ g++Rt+ +c++rw +yl PSME_00053156-RA 22 KGPWTVEEDLQLTSYISLHGQGRWSFLAKAAGLNRTGRSCRLRWINYL 69 79********************************************97 PP
2	Myb_DNA-binding	46.4	9.3e-15	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r + T+eE+ l+ +++ ++G++ W++Ia+ ++ gRt++++k++w++ PSME_00053156-RA 75 RSKITAEEERLITELHDRWGNK-WSRIAESLP-GRTDNEIKNYWRT 118 6678****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.098	17	69	IPR017930	Myb domain
SuperFamily	SSF46689	9.73E-30	21	116	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-14	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-14	22	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-23	23	76	IPR009057	Homeodomain-like
CDD	cd00167	6.46E-10	24	69	No hit	No description
PROSITE profile	PS51294	24.192	70	124	IPR017930	Myb domain
SMART	SM00717	3.4E-13	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-13	76	118	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-23	77	124	IPR009057	Homeodomain-like
CDD	cd00167	5.17E-10	79	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MAKRTWWGDS AVDNREETAT RKGPWTVEED LQLTSYISLH GQGRWSFLAK AAGLNRTGRS 60 CRLRWINYLR PDLKRSKITA EEERLITELH DRWGNKWSRI AESLPGRTDN EIKNYWRTRI 120 KKKLGLQDNG SSSIDEDNRV EFERSTDFYC LTKGPPDLDA AEPTSFPTEV TEEIAVQTNR 180 SPYLQNDILP QQIPASKVNY EYGLHEKIHG KEVVNDGQPR AVLQEHLEVS DDLFGKRSPY 240 NFSVDSLGIL LSSGADGGTQ YGTIPPSPQA FSDSESNLNC YWDVLWNHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-26	22	124	7	108	B-MYB
1gv2_A	1e-26	22	124	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	4e-26	22	124	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-26	22	124	58	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-26	22	124	27	128	MYB TRANSFORMING PROTEIN
1mse_C	1e-26	22	124	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-26	22	124	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P81391	3e-52	MYB05_ANTMA; Myb-related protein 305
STRING	EOY02421	1e-52	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	3e-53	myb domain protein 112

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]