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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00052617-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ERF | ||||||||
Protein Properties | Length: 582aa MW: 64654.7 Da PI: 9.1498 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.7 | 5.9e-08 | 330 | 367 | 16 | 53 |
AP2 16 vAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkl 53 v++Ir +++ +krf+lg+ taeeAa +++a+k l PSME_00052617-RA 330 VCHIRNVVDpT-SKKRFWLGTCNTAEEAATEYDKAAKIL 367 68999966643.26**********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13961 | 1.9E-7 | 16 | 40 | IPR025314 | Domain of unknown function DUF4219 |
Pfam | PF14223 | 3.5E-28 | 62 | 196 | No hit | No description |
PROSITE profile | PS51032 | 10.889 | 314 | 377 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0016 | 314 | 383 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-10 | 330 | 378 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-7 | 337 | 377 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MSNPLAETYL NEANKLDGSN FINWKFKMQT SMEGCGVWSI TNGDEAKPVV AAGGTAAQIQ 60 DWDKRENKAK VLLRMSVKDS ISPHIREAKT SAETWTALKD LYETSNTNRL LFLKTKLLGM 120 KMDANESVSS FFGHLKEVKD KLGDIGEKVS STDLVTITLN GMLEDYHMFI TGLAAREKPP 180 TFEELTGILL QEEEKHGNFK PQDSGLELWS NKRSSRGRSG ERGRGGRSSH NRAPQRPNQD 240 EIADNISETP NFDSRDLRLF VSNDALSAEI DDSDAWFVDS GASVHMTCNK KWYTNYKETQ 300 NGASIYLGDD RAYHIKGYRD IPVTLPNGSV CHIRNVVDPT SKKRFWLGTC NTAEEAATEY 360 DKAAKILKHP NTKKNFRSSG RETLAEQQSR RATFDRLIAF KAASSSASTA SVAALLLTPA 420 AQKINLRNKI KKKLLARSDI AKSVKPWTQP FLNRGVGVQG VGNDSLGMIR SSMRPEPHLR 480 NPSGNPNPNP SFNPIHSFNF VDNAADLQQP LVVMTLFGRT LWPHEGHGWV GAATGKNRLH 540 ATSNDNSSQP IPPEMKKVSQ QLFDLNLEAE EDYEGSHVAK AF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 6e-08 | ERF family protein |