PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052617-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 582aa    MW: 64654.7 Da    PI: 9.1498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052617-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.75.9e-083303671653
               AP2  16 vAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkl 53 
                       v++Ir +++    +krf+lg+  taeeAa  +++a+k l
  PSME_00052617-RA 330 VCHIRNVVDpT-SKKRFWLGTCNTAEEAATEYDKAAKIL 367
                       68999966643.26**********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139611.9E-71640IPR025314Domain of unknown function DUF4219
PfamPF142233.5E-2862196No hitNo description
PROSITE profilePS5103210.889314377IPR001471AP2/ERF domain
SMARTSM003800.0016314383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-10330378IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-7337377IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSNPLAETYL NEANKLDGSN FINWKFKMQT SMEGCGVWSI TNGDEAKPVV AAGGTAAQIQ  60
DWDKRENKAK VLLRMSVKDS ISPHIREAKT SAETWTALKD LYETSNTNRL LFLKTKLLGM  120
KMDANESVSS FFGHLKEVKD KLGDIGEKVS STDLVTITLN GMLEDYHMFI TGLAAREKPP  180
TFEELTGILL QEEEKHGNFK PQDSGLELWS NKRSSRGRSG ERGRGGRSSH NRAPQRPNQD  240
EIADNISETP NFDSRDLRLF VSNDALSAEI DDSDAWFVDS GASVHMTCNK KWYTNYKETQ  300
NGASIYLGDD RAYHIKGYRD IPVTLPNGSV CHIRNVVDPT SKKRFWLGTC NTAEEAATEY  360
DKAAKILKHP NTKKNFRSSG RETLAEQQSR RATFDRLIAF KAASSSASTA SVAALLLTPA  420
AQKINLRNKI KKKLLARSDI AKSVKPWTQP FLNRGVGVQG VGNDSLGMIR SSMRPEPHLR  480
NPSGNPNPNP SFNPIHSFNF VDNAADLQQP LVVMTLFGRT LWPHEGHGWV GAATGKNRLH  540
ATSNDNSSQP IPPEMKKVSQ QLFDLNLEAE EDYEGSHVAK AF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.16e-08ERF family protein