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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PSME_00052557-RA |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family |
Trihelix |
Protein Properties |
Length: 166aa MW: 18729.2 Da PI: 6.5019 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00052557-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 52.6 | 1.2e-16 | 90 | 162 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79
Wt+++v++Li+++ ++++++ ++ +W+ vs+ m+++gf++sp+qC +k+ l kryk++++ + t es+++c
PSME_00052557-RA 90 WTNHKVRHLIQVVCNVDKEFTKE-----KWKYVSELMMQKGFSVSPQQCLDKFHVLVKRYKRMNDLLGIDTHESHTNC 162
******************99876.....*************************************9998877777666 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 166 aa
Download sequence Send
to blast |
MQFETVNRLT FEGGGYLDGQ GASWWSQNCA NNDGLKIQAP GDSPNTDGIH VEQSSNVKII 60 SVTIGTGNLD CLVAEMVDLQ KNSEGPRMGW TNHKVRHLIQ VVCNVDKEFT KEKWKYVSEL 120 MMQKGFSVSP QQCLDKFHVL VKRYKRMNDL LGIDTHESHT NCVENL
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G21200.1 | 1e-13 | sequence-specific DNA binding transcription factors |