PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00052497-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 307aa MW: 33280.2 Da PI: 7.6452

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052497-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	45.2	2.5e-14	33	63	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 fh l efDe krsCr+rLa+hn+rrrk+q+ PSME_00052497-RA 33 SFHLLAEFDEVKRSCRKRLADHNRRRRKPQT 63 5***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	11.212	1	61	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.8E-8	32	60	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.92E-11	33	66	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEGDVGKVLC HETVRINPAA LVMGIRGLGI IKSFHLLAEF DEVKRSCRKR LADHNRRRRK 60 PQTNTIVPAV SSAEAATALK VEDDDNNVSG SCNNTSRGTV QTSVAAAASP VLRTEAQALL 120 NAMSLPLILQ NTKGSQMNNN SNSNTTTNNP MLQQPNSQKV PVANQQYVQQ QNGGGHKGPN 180 LSLSSPSVGM SLCNQRQTTA QDYSGMELAL PWLRTTSDYG RLSHRPPPAM DNILHPIISH 240 EKENVEAFLA SSVQNFLPLT GSMSSRELGS SQWMVGSNDS ASSLEAGQQM FSLLEPAEHH 300 NRTEEQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	60	KRSCRKRLADHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ060756	6e-69	FJ060756.1 Pinus taeda isolate 5687 anonymous locus 0_16866_02 genomic sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	2e-10	SBP family protein