PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052202-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

GRAS

Protein Properties

Length: 774aa MW: 87069.3 Da PI: 5.7571

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052202-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	375.6	6.5e-115	400	771	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+ lL++cA+av+++d++ a+++L++++++asp+gd +qRla yf+ AL arl++s+ +l+++ ++ ts +e l+a++l+ + P+ k PSME_00052202-RA 400 LRALLVHCAQAVATDDTRGANEILKQIRQHASPYGDGTQRLANYFADALVARLSGSGGRLFSTPSSVLTS---AAEILKAYQLLLFAIPTAKS 489 5789*******************************************************999999988...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s++++Nq++l+ +++++r+Hi+Df+i +G+QWp+L+q+LasRp+gpp+lRiTg++ p++g +e++eetg+rLa++A+++gvpfe+++ +a PSME_00052202-RA 490 SYFLTNQTVLNVTDKSNRLHIVDFGILYGFQWPSLIQSLASRPGGPPMLRITGIDFPQPGfrAAERIEETGRRLADYAKSFGVPFEYHA-IAA 581 ********************************************************99*************************.799 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e++++eeL+++++E+l+Vn++++ +llde+v les+++ vL+ ++s++P+v+++ + n++ F +rf e l yysalfd++e+ +pr PSME_00052202-RA 582 KWENVDVEELSLRSDEVLVVNCMYRFNNLLDETVVLESPKNIVLNKIRSMNPRVFIHGVVNGAFNAPFFITRFREVLFYYSALFDAIETIVPR 674 ***************************************************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e+ +r +E+el+gr i nvvaceg er+ r et+++W+ r+++aGF ++pl+ + +q + + + + +rv+e+ ++++ gWk+r +v PSME_00052202-RA 675 EHPQRLLLEKELFGRVILNVVACEGLERVVRPETYKQWQVRIQRAGFVQLPLDRAIFSQTRDNFKSFFHKDFRVDEDGKWILYGWKGRITSAV 767 ***************************************************************9888****************** PP GRAS 371 SaWr 374 Wr PSME_00052202-RA 768 ATWR 771 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.782	374	751	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-112	400	771	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MADEKTGIFH SNNINVVSNN IRLQRPWLQQ GTAMPATQFR GFQPPMPDEK TGIFYSDNIN 60 GVSNNIWLQR PRLQQETAMP ATQFRGSLSS EKSITISDGE SEDTEVYSDI VLKYISDMLM 120 DENMDEKKCM YQECSALQAT VKPFYDILGE NYPPQGLCNS NTVGENQKQS LNYYEDDVQN 180 KIEDSSWIGD FFNSQMPGGF ESPLSPNLFA GYSSQYLFNY SGSSAVTDSL PGSPTYEPSL 240 SESKQGLEDI QVVPKQNFEP GVENGCHFRA PKKVSEPDPD LQLGKREDAI FGVGVTFQMN 300 AAHSEDENGP KREKDPHRGD LDLEDRDSNK LSAVYPDNVI RNESFDKVLL CTENGRVFLA 360 VQLEILQNGV LKSVQSGFLK GLQGSKARGR KQGKRAVVDL RALLVHCAQA VATDDTRGAN 420 EILKQIRQHA SPYGDGTQRL ANYFADALVA RLSGSGGRLF STPSSVLTSA AEILKAYQLL 480 LFAIPTAKSS YFLTNQTVLN VTDKSNRLHI VDFGILYGFQ WPSLIQSLAS RPGGPPMLRI 540 TGIDFPQPGF RAAERIEETG RRLADYAKSF GVPFEYHAIA AKWENVDVEE LSLRSDEVLV 600 VNCMYRFNNL LDETVVLESP KNIVLNKIRS MNPRVFIHGV VNGAFNAPFF ITRFREVLFY 660 YSALFDAIET IVPREHPQRL LLEKELFGRV ILNVVACEGL ERVVRPETYK QWQVRIQRAG 720 FVQLPLDRAI FSQTRDNFKS FFHKDFRVDE DGKWILYGWK GRITSAVATW RPST

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MADEKTGIFH SNNINVVSNN IRLQRPWLQQ GTAMPATQFR GFQPPMPDEK TGIFYSDNIN  60
GVSNNIWLQR PRLQQETAMP ATQFRGSLSS EKSITISDGE SEDTEVYSDI VLKYISDMLM  120
DENMDEKKCM YQECSALQAT VKPFYDILGE NYPPQGLCNS NTVGENQKQS LNYYEDDVQN  180
KIEDSSWIGD FFNSQMPGGF ESPLSPNLFA GYSSQYLFNY SGSSAVTDSL PGSPTYEPSL  240
SESKQGLEDI QVVPKQNFEP GVENGCHFRA PKKVSEPDPD LQLGKREDAI FGVGVTFQMN  300
AAHSEDENGP KREKDPHRGD LDLEDRDSNK LSAVYPDNVI RNESFDKVLL CTENGRVFLA  360
VQLEILQNGV LKSVQSGFLK GLQGSKARGR KQGKRAVVDL RALLVHCAQA VATDDTRGAN  420
EILKQIRQHA SPYGDGTQRL ANYFADALVA RLSGSGGRLF STPSSVLTSA AEILKAYQLL  480
LFAIPTAKSS YFLTNQTVLN VTDKSNRLHI VDFGILYGFQ WPSLIQSLAS RPGGPPMLRI  540
TGIDFPQPGF RAAERIEETG RRLADYAKSF GVPFEYHAIA AKWENVDVEE LSLRSDEVLV  600
VNCMYRFNNL LDETVVLESP KNIVLNKIRS MNPRVFIHGV VNGAFNAPFF ITRFREVLFY  660
YSALFDAIET IVPREHPQRL LLEKELFGRV ILNVVACEGL ERVVRPETYK QWQVRIQRAG  720
FVQLPLDRAI FSQTRDNFKS FFHKDFRVDE DGKWILYGWK GRITSAVATW RPST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	8e-54	407	774	25	381	Protein SCARECROW
5b3h_D	8e-54	407	774	25	381	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937596.1	0.0	scarecrow-like protein 9
Refseq	XP_010937597.1	0.0	scarecrow-like protein 9
Refseq	XP_029123935.1	0.0	scarecrow-like protein 9
TrEMBL	A3E2G2	0.0	A3E2G2_PINRA; SCARECROW-like protein 1
STRING	XP_008799752.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-177	GRAS family protein