PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052169-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 221aa    MW: 25910.4 Da    PI: 7.1774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052169-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.61.4e-41201463128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       pGfrF Pt+eel+++yLkk+v+g + l+l+ +i++v++y+++Pw+L    ++ +e++w+fF++rd++++   r++r+t sgyWkatg+d++v 
  PSME_00052169-RA  20 PGFRFYPTEEELLSFYLKKRVTGCDqLNLDIIIPTVQLYHYDPWELAgFVHYVGERQWFFFVPRDHNKS-CPRPSRMTVSGYWKATGSDRAVR 111
                       9********************99875777667**************9656677999*********9876.68********************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  + +glkk+Lvfykg+ap++++tdW+m+eyr+
  PSME_00052169-RA 112 NELLQCIGLKKILVFYKGKAPRAQRTDWIMNEYRM 146
                       *99999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-4517167IPR003441NAC domain
PROSITE profilePS5100548.06218167IPR003441NAC domain
PfamPF023655.7E-2320146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MQEEIYNDWK VKGEEIMDLP GFRFYPTEEE LLSFYLKKRV TGCDQLNLDI IIPTVQLYHY  60
DPWELAGFVH YVGERQWFFF VPRDHNKSCP RPSRMTVSGY WKATGSDRAV RNELLQCIGL  120
KKILVFYKGK APRAQRTDWI MNEYRMPDSR LSAPKKTDIV LCRIYRKAAS NKSMEHPATQ  180
DYLDKEETVV SGDNYGEKSH SVTLDHHDSY QLSNPVEKSD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-412017019168NO APICAL MERISTEM PROTEIN
1ut4_B2e-412017019168NO APICAL MERISTEM PROTEIN
1ut7_A2e-412017019168NO APICAL MERISTEM PROTEIN
1ut7_B2e-412017019168NO APICAL MERISTEM PROTEIN
3swm_A2e-412017022171NAC domain-containing protein 19
3swm_B2e-412017022171NAC domain-containing protein 19
3swm_C2e-412017022171NAC domain-containing protein 19
3swm_D2e-412017022171NAC domain-containing protein 19
3swp_A2e-412017022171NAC domain-containing protein 19
3swp_B2e-412017022171NAC domain-containing protein 19
3swp_C2e-412017022171NAC domain-containing protein 19
3swp_D2e-412017022171NAC domain-containing protein 19
4dul_A2e-412017019168NAC domain-containing protein 19
4dul_B2e-412017019168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791987.12e-60NAC domain-containing protein 22-like
RefseqXP_010918221.22e-59NAC domain-containing protein 22
SwissprotQ10S654e-53NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A075M5N51e-104A0A075M5N5_9SPER; NAC domain protein
STRINGPavir.Db00028.1.p1e-59(Panicum virgatum)
STRINGXP_008791987.17e-60(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.14e-54NAC domain containing protein 35
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]