PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052114-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 356aa    MW: 39515.4 Da    PI: 6.3771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052114-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-191562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd +l+++v+ +G g+W+t a+  g+ R++k+c++rw +yl
  PSME_00052114-RA 15 RGPWTAEEDHKLIHYVEHHGLGNWRTLAKLAGLSRCGKSCRLRWKNYL 62
                      89********************************************97 PP
2Myb_DNA-binding491.4e-1568111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg ++ +Ed+ ++++++ lG++ W++Ia+++  gRt++++k++w++
  PSME_00052114-RA  68 RGTFSLQEDLTIIRLHAILGNK-WSAIASHLD-GRTDNEIKHHWNT 111
                       899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-24765IPR009057Homeodomain-like
PROSITE profilePS5129425.7421066IPR017930Myb domain
SuperFamilySSF466894.58E-3112109IPR009057Homeodomain-like
SMARTSM007171.4E-141464IPR001005SANT/Myb domain
PfamPF002491.5E-171562IPR001005SANT/Myb domain
CDDcd001675.31E-121762No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2366117IPR009057Homeodomain-like
SMARTSM007171.6E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129419.00767117IPR017930Myb domain
PfamPF002492.7E-1468111IPR001005SANT/Myb domain
CDDcd001676.21E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRAPCCGDH QGLTRGPWTA EEDHKLIHYV EHHGLGNWRT LAKLAGLSRC GKSCRLRWKN  60
YLRPDIKRGT FSLQEDLTII RLHAILGNKW SAIASHLDGR TDNEIKHHWN TKLKKRLLLM  120
GIDPVTHRSL PTRDHMLSPF IASSSSTVDL AALTAMAASW NISALIEAEL NRLATELSQN  180
EKPLGTLKNP VVLPVSWPVN PTGADSTSSD ETSLLLPSET SMDQLLRPQN QITQAFVPEQ  240
KDPIKLYNTF SQDSLRFSSD VQEIRKSELG NGHMRAEERL LAVDTEITGA NEPSSGRSTS  300
SNLDKGGSRI LENTIPYQAE IGNGAESMWQ AAGVTDNEDE SNSWLNLLDF MENSMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596250.12e-68PREDICTED: transcription factor MYB39
RefseqXP_016456555.12e-68PREDICTED: transcription factor MYB39-like
RefseqXP_020276035.11e-68myb-related protein Zm38-like
TrEMBLA0A1S3YWW74e-67A0A1S3YWW7_TOBAC; transcription factor MYB39-like
STRINGXP_009596250.16e-68(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.14e-67myb domain protein 74