PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051901-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 442aa    MW: 49254.3 Da    PI: 5.078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051901-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.9e-122169148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +grW++eEd +l++++ + G    W+ +a++ g+ R++k+ ++rw +yl
  PSME_00051901-RA 21 KGRWSPEEDNKLINYIMENGFLgGWSYVAKKAGLERCGKSSRLRWINYL 69
                      79******************8778***********************97 PP
2Myb_DNA-binding42.61.4e-1375118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++ +E++l++++   lG++ W++Ia  ++ gRt++++k++w++
  PSME_00051901-RA  75 RGAFSCQEELLIIHLQSILGNR-WSLIATQLP-GRTDNELKNYWNT 118
                       8999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.291669IPR017877Myb-like domain
SuperFamilySSF466891.27E-2220116IPR009057Homeodomain-like
SMARTSM007172.4E-72071IPR001005SANT/Myb domain
PfamPF002492.0E-102169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-182276IPR009057Homeodomain-like
PROSITE profilePS5129423.16870124IPR017930Myb domain
SMARTSM007177.7E-1274122IPR001005SANT/Myb domain
PfamPF002491.5E-1175118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2277125IPR009057Homeodomain-like
CDDcd001671.12E-881118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MRCTAIAESV HLTPSKPISR KGRWSPEEDN KLINYIMENG FLGGWSYVAK KAGLERCGKS  60
SRLRWINYLR PGLKRGAFSC QEELLIIHLQ SILGNRWSLI ATQLPGRTDN ELKNYWNTCI  120
KKKLKLKHNL SSSFITTVKS DIPSQSNNIC KTNSVLPQDD YAAFTSFHSA QPILDVMSEG  180
SQPQNNTLDP MTTGENRFCD PGVIELRHAE QELNQSDEFL IDLDHTKNDQ IPCSCLWINS  240
SNSIHMDKSF SSHTAFTAPC LQGAKSSTYD EIVMESCMNT LSIREATLPA DYFLGSTGTS  300
IPALVECESW KGNIENAENF IMIDYSNPWT ASHSCSNTAE YCSHVVDPGA FTTRQVGISI  360
LEEYDTLYEK IDGGGDLDQW DRSGIVNHEE ANANPIPAIL RPVKGNVPLE IECKGGAGHF  420
RAWALEDIYN INPAAPSDFD LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21211247108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE81e-72A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-45myb domain protein 46