PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051778-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 332aa    MW: 37322.1 Da    PI: 7.3696
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051778-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.35.5e-31265318255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LHe+Fv+ave LGG+e+AtPk++lelm+vk+L ++hvkSHLQ+YR+
  PSME_00051778-RA 265 PRMRWTSTLHEHFVHAVELLGGHERATPKSVLELMNVKDLNVSHVKSHLQMYRT 318
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-27262319IPR009057Homeodomain-like
SuperFamilySSF466897.53E-15262319IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-23265319IPR006447Myb domain, plants
PfamPF002498.7E-7266317IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MPNIKGLYTR ILESVMEPSN SIPDLSLHIC PPNTKPASLF ASNSFEKDGD HRLDLFQTKL  60
REEYSSKSSD GSKKSWQRVD DTQLELSLAS FDFQAGSPEA NGSYLDQQYF SITINGSPLF  120
QKPNDEGQGH RSICSQGLME LSRGQQDPRL IMSYFSGGEM TDAIEEPSSL AGLVDSYSGH  180
GFQVSVNNED YRCSGKILRD DKAEEAPSFR PYEGYMLMTP NHPHQSILIP PKKVRSCNPS  240
PVTIPESHSC IKSRFMTKRK RMRAPRMRWT STLHEHFVHA VELLGGHERA TPKSVLELMN  300
VKDLNVSHVK SHLQMYRTMK ATDKSECSSG IC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17266320458Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-36G2-like family protein