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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
PSME_00051532-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family |
NAC |
| Protein Properties |
Length: 188aa MW: 21388.8 Da PI: 9.7738 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00051532-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 165.2 | 2.4e-51 | 30 | 156 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
ppGfrF Ptdeelvv+yL+kk++++ +++ +i+evd+yk++Pw+Lp k+ +ekewyfF++ d+ky++g+r++r+++sgyWkatg d+++ +
PSME_00051532-RA 30 PPGFRFFPTDEELVVHYLCKKASSQIIHV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPCDRKYPNGSRPKRVASSGYWKATGVDNPINA 121
9**************************99.88***************8777899*************************************** PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl
PSME_00051532-RA 122 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 156
966777***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MDVHDLALEV SIKVFLAFSM DVHDLALEWP PGFRFFPTDE ELVVHYLCKK ASSQIIHVPI 60
IAEVDLYKYD PWQLPDKALF GEKEWYFFTP CDRKYPNGSR PKRVASSGYW KATGVDNPIN 120
AKGGKKRVGI KKALVFYAGK APKGSKTNWI MHEYRLADVS RPTRKKGSLR VSWSTSSLLC 180
FESAVLTT
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-70 | 27 | 171 | 15 | 154 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-70 | 27 | 171 | 15 | 154 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-70 | 27 | 171 | 15 | 154 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-70 | 27 | 171 | 15 | 154 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 6e-70 | 27 | 171 | 15 | 154 | NAC domain-containing protein 19 |
| 4dul_B | 6e-70 | 27 | 171 | 15 | 154 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Publications
? help Back to Top |
- Florentin A,Damri M,Grafi G
Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization.
Dev. Dyn., 2013. 242(10): p. 1121-33
[PMID:23798027] - Jensen MK, et al.
ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.
FEBS Open Bio, 2013. 3: p. 321-7
[PMID:23951554] - Wang YX
Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
Mol. Biol. Rep., 2013. 40(11): p. 6451-8
[PMID:24057250] - Yang X, et al.
Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis.
Plant Cell Rep., 2015. 34(6): p. 943-58
[PMID:25666276] - Du Q,Wang H
The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
Plant Signal Behav, 2015. 10(10): p. e1078955
[PMID:26340415] - Takasaki H, et al.
SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
Plant J., 2015. 84(6): p. 1114-23
[PMID:26518251] - Liu Y,Sun J,Wu Y
Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice.
J. Plant Res., 2016. 129(5): p. 955-962
[PMID:27216423] - Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR
Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining.
PLoS ONE, 2016. 11(9): p. e0162327
[PMID:27618630] - Zhao J,Missihoun TD,Bartels D
The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana.
Planta, 2018. 248(4): p. 1017-1027
[PMID:30027414]
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