 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00050941-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 425aa MW: 47239.2 Da PI: 8.4465 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00050941-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.3 | 1.2e-52 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtd+el+v+yL kk+++++++l vi+evd+yk++PwdLp+k ++ekewyfFs+rd+ky++g r+nr++ +gyWkatg+dk+++
PSME_00050941-RA 16 LPPGFRFHPTDQELIVHYLSKKAAAEPFTL-PVIAEVDLYKFNPWDLPEKSLTGEKEWYFFSPRDRKYPNGFRPNRSAGTGYWKATGTDKPIC 107
79*************************999.89***************8888899************************************** PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++g ++g+kk Lvfy g+ap+g+kt+W+mheyrl
PSME_00050941-RA 108 HETGLKIGIKKALVFYIGKAPRGTKTNWIMHEYRL 142
*********************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MAMAMRKNPS LAQLSLPPGF RFHPTDQELI VHYLSKKAAA EPFTLPVIAE VDLYKFNPWD 60
LPEKSLTGEK EWYFFSPRDR KYPNGFRPNR SAGTGYWKAT GTDKPICHET GLKIGIKKAL 120
VFYIGKAPRG TKTNWIMHEY RLVESNNGAG CSRASKRKAS GSVRMDEWVL CRLYKKAPGV 180
QKAAAAAAAA AAAEAGKPRE ESASCLEEQR ATHPEIGNDQ FNTAPARIAS LEQLRDHDNA 240
NWMEFGDSPM AGQVGPCRYA KESQHSNGVR TEAGQVRPCR YAKEPQHSNG VRTEGGSYRY 300
AFDTPPKPPI SIPGNVDQLQ SVGIKELLQY SEQCGAPVFP EMALPVHNPT EEEVQSSFRL 360
YHSDNFGQHS SQHLAFNFDN QGMQKAFNFD SQGIQSTLSQ MEPMATLLNG ASSFLPGTEY 420
FQRLQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-81 | 3 | 182 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-81 | 3 | 182 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-81 | 3 | 182 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-81 | 3 | 182 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 9e-81 | 3 | 182 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 9e-81 | 3 | 182 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
