PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

PSME_00050918-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

ERF

Protein Properties

Length: 189aa MW: 21021.6 Da PI: 7.8217

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050918-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.6e-16	23	72	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+Wv+eIr p + r +lg+++t+e+Aa+a++ a +l+g PSME_00050918-RA 23 QFKGIRMRK-WGKWVSEIRMP-----NsmGRLWLGSYDTPEKAARAYDFAVYCLRG 72 69***99.******9.....3369******************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.2E-28	22	81	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.41E-19	23	80	IPR016177	DNA-binding domain
CDD	cd00018	3.65E-26	23	80	No hit	No description
SMART	SM00380	2.7E-30	23	86	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.43	23	80	IPR001471	AP2/ERF domain
Pfam	PF00847	4.6E-9	24	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-8	24	35	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-8	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MAKTSQNQNC RSKPENRSLK SRQFKGIRMR KWGKWVSEIR MPNSMGRLWL GSYDTPEKAA 60 RAYDFAVYCL RGSKAKLNFP SIPPQIPCAS SLSPPQIQAS AAKFAAEEFR LPSEDDASFS 120 PSSSGSKPFS FSGSGSEAEC RNDGQEIWAE HGPAFWDSVL LECLESGKSP NFDDFPPLDD 180 SMNYYGVLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-15	23	81	14	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103899	1e-116	BT103899.1 Picea glauca clone GQ02803_N18 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006843906.1	2e-38	ethylene-responsive transcription factor ERF017
Swissprot	Q9S7L5	2e-35	ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBL	A9NQM1	1e-85	A9NQM1_PICSI; Uncharacterized protein
STRING	ERN05581	9e-38	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74930.1	2e-37	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HY, et al. ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element. New Phytol., 2016. 211(2): p. 599-613 [PMID:26974851] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376]