PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050915-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 325aa    MW: 36830.1 Da    PI: 6.5068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050915-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd  lv +++++G+g+W++I+++ g+ R+ k+c++rw +yl
  PSME_00050915-RA 14 KGPWTPEEDIALVSYIQEHGPGNWRLIPARTGLLRCSKSCRLRWTNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding47.63.9e-1567112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T+ Ed +++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  PSME_00050915-RA  67 RGNFTPYEDRIIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129425.09965IPR017930Myb domain
SuperFamilySSF466891.36E-3111108IPR009057Homeodomain-like
SMARTSM007174.0E-151363IPR001005SANT/Myb domain
PfamPF002491.4E-161461IPR001005SANT/Myb domain
CDDcd001674.83E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129420.24666116IPR017930Myb domain
SMARTSM007174.3E-1466114IPR001005SANT/Myb domain
PfamPF002495.0E-1467112IPR001005SANT/Myb domain
CDDcd001672.35E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRSPCCDKV GVKKGPWTPE EDIALVSYIQ EHGPGNWRLI PARTGLLRCS KSCRLRWTNY  60
LRPGIRRGNF TPYEDRIIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKRISKLQ  120
TMIAGNDLNR DSIRRSSFSS DDYRSSKGQW ETKLQTDIHR AKKALFEALS MQAPSSSLQG  180
IGTMSDSKCM ERNPNSSYAV SMENLSKLLE GWKQSSPNEI KPSSIMINPL EGNQCHISQH  240
SAEVPISCDS EIEGFHDVVN GTLTWESSFN SSQDYGDDGG SLHDFDLCQM DSYQNTVDSN  300
LPFSVLENWL MEETNQDQFS YSSVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1005800.0BT100580.1 Picea glauca clone GQ0026_G03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258354.11e-104PREDICTED: myb-related protein 306
SwissprotP813925e-96MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0D6R8Q91e-132A0A0D6R8Q9_ARACU; Uncharacterized protein
STRINGXP_010258354.11e-103(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.11e-91myb domain protein 31
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]