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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PSME_00050582-RA |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family |
NAC |
Protein Properties |
Length: 396aa MW: 44372.6 Da PI: 6.5084 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00050582-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 178.7 | 1.5e-55 | 18 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelv++yL +kv +++++ +i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkdkev+
PSME_00050582-RA 18 LPPGFRFHPTDEELVSCYLVRKVLDNSFSG-IAIADVDLNKSEPWDLPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDKEVF 109
79*************************999.88***************99999**************************************** PP
NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
++ +++l+g+kktLvfy+grapkgekt+Wvmheyrle
PSME_00050582-RA 110 KAhTDKLIGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 146
9867788****************************85 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MIMGSSSRSS GNSGEEGLPP GFRFHPTDEE LVSCYLVRKV LDNSFSGIAI ADVDLNKSEP 60 WDLPGKAKMG EKEWYFFSLR DRKYPTGLRT NRATEAGYWK ATGKDKEVFK AHTDKLIGMK 120 KTLVFYRGRA PKGEKTNWVM HEYRLEGHLS YHQLSKNCKD EWVVCRINHK NSGGKKTSPP 180 GLINRNFYID ECLGSHSLPA LLESPTYTTR AVQNEETELS DIANIHLCNN NNILPNDPQF 240 NLNMRTANPM SCLFSQISSS GSFQGVSSQM GSSNPYLMAL AEQYSISELN LKQCKMEPSS 300 SGANNDNSLQ ISHQEQWSMG RARHDQQQQQ LNIENNGISN TGTMETHGID PQDHTAMCIN 360 PDEINPAMFN RANRSYPVDL SAEAGPALDL DSLWAY
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-53 | 18 | 176 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 18 | 176 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 18 | 176 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 18 | 176 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 18 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 18 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 18 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 18 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 18 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 18 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 18 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 18 | 176 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-53 | 18 | 176 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 18 | 176 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |