PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050582-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 396aa    MW: 44372.6 Da    PI: 6.5084
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050582-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.5e-55181461129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelv++yL +kv +++++   +i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkdkev+
  PSME_00050582-RA  18 LPPGFRFHPTDEELVSCYLVRKVLDNSFSG-IAIADVDLNKSEPWDLPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDKEVF 109
                       79*************************999.88***************99999**************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++ +++l+g+kktLvfy+grapkgekt+Wvmheyrle
  PSME_00050582-RA 110 KAhTDKLIGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 146
                       9867788****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6314170IPR003441NAC domain
PROSITE profilePS5100560.16118170IPR003441NAC domain
PfamPF023654.1E-2919145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MIMGSSSRSS GNSGEEGLPP GFRFHPTDEE LVSCYLVRKV LDNSFSGIAI ADVDLNKSEP  60
WDLPGKAKMG EKEWYFFSLR DRKYPTGLRT NRATEAGYWK ATGKDKEVFK AHTDKLIGMK  120
KTLVFYRGRA PKGEKTNWVM HEYRLEGHLS YHQLSKNCKD EWVVCRINHK NSGGKKTSPP  180
GLINRNFYID ECLGSHSLPA LLESPTYTTR AVQNEETELS DIANIHLCNN NNILPNDPQF  240
NLNMRTANPM SCLFSQISSS GSFQGVSSQM GSSNPYLMAL AEQYSISELN LKQCKMEPSS  300
SGANNDNSLQ ISHQEQWSMG RARHDQQQQQ LNIENNGISN TGTMETHGID PQDHTAMCIN  360
PDEINPAMFN RANRSYPVDL SAEAGPALDL DSLWAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-531817617171NO APICAL MERISTEM PROTEIN
1ut4_B1e-531817617171NO APICAL MERISTEM PROTEIN
1ut7_A1e-531817617171NO APICAL MERISTEM PROTEIN
1ut7_B1e-531817617171NO APICAL MERISTEM PROTEIN
3swm_A1e-531817620174NAC domain-containing protein 19
3swm_B1e-531817620174NAC domain-containing protein 19
3swm_C1e-531817620174NAC domain-containing protein 19
3swm_D1e-531817620174NAC domain-containing protein 19
3swp_A1e-531817620174NAC domain-containing protein 19
3swp_B1e-531817620174NAC domain-containing protein 19
3swp_C1e-531817620174NAC domain-containing protein 19
3swp_D1e-531817620174NAC domain-containing protein 19
4dul_A1e-531817617171NAC domain-containing protein 19
4dul_B1e-531817617171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1163980.0BT116398.1 Picea glauca clone GQ03718_B07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620729.13e-96NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-87NC100_ARATH; NAC domain-containing protein 100
TrEMBLG8CPZ10.0G8CPZ1_PICAB; NAC-domain containing protein 2
STRINGcassava4.1_010179m1e-95(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-89NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]