 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00050232-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 303aa MW: 34008.4 Da PI: 8.7216 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00050232-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 125.8 | 3.6e-39 | 15 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeel+++yLkkkv++++++ + i+e+d+yk++PwdLp d+ky++g r+nr + sgyWkatg+dk+++
PSME_00050232-RA 15 LPPGFRFHPTDEELLTHYLKKKVSSSPVPG-SLIAEIDLYKYDPWDLP----------------DRKYPNGARPNRFAGSGYWKATGTDKPIV 90
79*************************999.88**************9................789************************** PP
NAM 94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + ++vg+kk+Lvfy+gr kg kt+W+mheyrl
PSME_00050232-RA 91 ITsgstSPQKVGVKKSLVFYRGRPLKGIKTNWIMHEYRL 129
9966655566***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MMEGSAFQQQ VVPQLPPGFR FHPTDEELLT HYLKKKVSSS PVPGSLIAEI DLYKYDPWDL 60
PDRKYPNGAR PNRFAGSGYW KATGTDKPIV ITSGSTSPQK VGVKKSLVFY RGRPLKGIKT 120
NWIMHEYRLA ETMPTKRNRS MRLDDWVLCR IYKKVSHSPV VVSCQDDSHE SPADVQRSHK 180
KPAMPKFSSF STLLEKEGPL IENLLSHATS DVNNVALSSA EPSSELRSHV SMSMDFHGDE 240
VSSVYPDKRQ NNQNPSSWLQ LQSSNIPYVT GAVPVPLTEN RVWNSDLVCP LSTGNVWSSY 300
EDG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 8e-60 | 15 | 158 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 8e-60 | 15 | 158 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 8e-60 | 15 | 158 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 8e-60 | 15 | 158 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 8e-60 | 15 | 158 | 20 | 172 | NAC domain-containing protein 19 |
| 3swm_B | 8e-60 | 15 | 158 | 20 | 172 | NAC domain-containing protein 19 |
| 3swm_C | 8e-60 | 15 | 158 | 20 | 172 | NAC domain-containing protein 19 |
| 3swm_D | 8e-60 | 15 | 158 | 20 | 172 | NAC domain-containing protein 19 |
| 3swp_A | 8e-60 | 15 | 158 | 20 | 172 | NAC domain-containing protein 19 |
| 3swp_B | 8e-60 | 15 | 158 | 20 | 172 | NAC domain-containing protein 19 |
| 3swp_C | 8e-60 | 15 | 158 | 20 | 172 | NAC domain-containing protein 19 |
| 3swp_D | 8e-60 | 15 | 158 | 20 | 172 | NAC domain-containing protein 19 |
| 4dul_A | 8e-60 | 15 | 158 | 17 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 8e-60 | 15 | 158 | 17 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
