PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050136-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 408aa    MW: 46038.4 Da    PI: 8.1984
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050136-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.3e-53411681128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF Ptdeelvv+yL+kk++++++++  +i+evd+yk++Pw+Lp k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++ 
  PSME_00050136-RA  41 LPPGFRFFPTDEELVVHYLCKKAASQNIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIN 132
                       79****************************.88***************8777899************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl
  PSME_00050136-RA 133 AKgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 168
                       *966777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-6437194IPR003441NAC domain
PROSITE profilePS5100561.27741194IPR003441NAC domain
PfamPF023657.0E-2742168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MVSRRKELKG PAIAKAGQRI ESTEQEDLNM VRRNAEAELQ LPPGFRFFPT DEELVVHYLC  60
KKAASQNIPV PIIAEVDLYK YDPWQLPDKA LFGEKEWYFF TPRDRKYPNG SRPNRAAGSG  120
YWKATGADKP INAKGGKKRV GIKKALVFYA GKAPKGSKTN WIMHEYRLAD VSRPARKKGS  180
LRLDDWVLCR IYNKKISAEK LALEQKEGPM DAPMEAIDEK DMENQPASTE VEHSGIEQNN  240
PSSDNLRKLG PSPTSHNAVP PGSYPMNANI NLQNDSFQNT TSHFNGSTLK APVQNIAFNS  300
IPSSINHQWT NYNSTDLVSR LHTDSSSSKP SSSSDPISEK EEVQSSFRVE NFSQQQPQSV  360
FNSSLEGLQN PFSHLDHLNF FDSYQDYFTG LTTSDYLPRF NPNDMLFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-87332007174Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00121DAPTransfer from AT1G01720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.11e-102NAC domain-containing protein 68-like isoform X2
TrEMBLA0A0D6R3P91e-172A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGGSMUA_Achr4P02390_0011e-100(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-95NAC family protein