 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PSME_00049694-RA |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
Family |
NAC |
Protein Properties |
Length: 349aa MW: 40134.8 Da PI: 5.0498 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00049694-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 132.3 | 3.4e-41 | 16 | 122 | 1 | 106 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+ppGfrFhPtdeelv++yLkkkv++k+++l +vik+vd+yk+ePwdL++ k+ e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk
PSME_00049694-RA 16 VPPGFRFHPTDEELVDYYLKKKVASKRIDL-DVIKDVDLYKLEPWDLEErcKIGYeEQTEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDK 107
69****************************.9***************953433333666********************************** PP
NAM 91 evlskkgelvglkktL 106
++++ k +l+g++ktL
PSME_00049694-RA 108 AIYA-KLKLIGMRKTL 122
****.999*******9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MDDLNSYDMD NLQSRVPPGF RFHPTDEELV DYYLKKKVAS KRIDLDVIKD VDLYKLEPWD 60 LEERCKIGYE EQTEWYFFSH KDKKYPTGTR TNRATVAGFW KATGRDKAIY AKLKLIGMRK 120 TLEEGWVVCR AFKKRSTAQK KASDRDFSAS SAFYEVDQNS SLPEFDSLDM KLPQQQDHGH 180 QFGYQLQQFA GCKQELEPLD YQLEHNPFLQ LPQLESPKLP CNANSSSSSA GNRPEYSMTS 240 LLESANMEML LPHSTCTGPH EQQQQQQVGA FYSEEQVYTD WRMLDKFVAS QLSQEDVIDQ 300 VARFSNGLNY NPMPDTGSLL RQNKLLSEAD YAAASNSNSY GDIFWGFGK
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |