PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00049413-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 517aa MW: 56196.1 Da PI: 6.5574

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049413-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	25.2	4.3e-08	169	190	57	78
SS--S-STTTT-------S--- CS SBP 57 eekrsCrrrLakhnerrrkkqa 78 ++ rsCrrrLa+hnerrrk+q+ PSME_00049413-RA 169 DANRSCRRRLAGHNERRRKSQP 190 789****************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103612	1.71E-5	169	193	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MQAVAAPNGI FRALSLALMD WDMTASSWDL DNFMLFSCRE LGQTEAAQPV EVEENHCKLS 60 MEHTDNQTSN IGFLGLRNQV ESQEGSLGDA QGNSSSSSKA MGNRTEHHSK HTVMTPQRSS 120 FLGSGSITGG DNASAEKSKD SKQNSIVDGS GEDCHIGLKL GKRTYYSEDA NRSCRRRLAG 180 HNERRRKSQP DPMGINSARL LPSFHDNRLG SYLTDRPFFM HPRMNSNTVL EDPNDIRDGN 240 KTWPRFIKTE DQSAYDRHLH IPGIDQQSYS TSERLLLFLH NSKILPDNVV NQGYPQYIQS 300 SGGPVGQALT LSSSSGTVSS GLEVTSSLQS LSGVSDSGRA LSLLSSPSWA SRASGSGSLN 360 MPTRPAITLD HFMHNQPPMA VPLMQGLQQS YDLAEDKLLT ISPQTPASLV SSGFSATGGN 420 SIDKEQTSAT LDTNTGCIGN FETRMPSLFQ VPGSRGSQGA SPQDARCTID LMRRSSDGQM 480 NESHAVPGAG QHGSSQFSDY PSVRPYHSSM FYPQQMM

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MQAVAAPNGI FRALSLALMD WDMTASSWDL DNFMLFSCRE LGQTEAAQPV EVEENHCKLS  60
MEHTDNQTSN IGFLGLRNQV ESQEGSLGDA QGNSSSSSKA MGNRTEHHSK HTVMTPQRSS  120
FLGSGSITGG DNASAEKSKD SKQNSIVDGS GEDCHIGLKL GKRTYYSEDA NRSCRRRLAG  180
HNERRRKSQP DPMGINSARL LPSFHDNRLG SYLTDRPFFM HPRMNSNTVL EDPNDIRDGN  240
KTWPRFIKTE DQSAYDRHLH IPGIDQQSYS TSERLLLFLH NSKILPDNVV NQGYPQYIQS  300
SGGPVGQALT LSSSSGTVSS GLEVTSSLQS LSGVSDSGRA LSLLSSPSWA SRASGSGSLN  360
MPTRPAITLD HFMHNQPPMA VPLMQGLQQS YDLAEDKLLT ISPQTPASLV SSGFSATGGN  420
SIDKEQTSAT LDTNTGCIGN FETRMPSLFQ VPGSRGSQGA SPQDARCTID LMRRSSDGQM  480
NESHAVPGAG QHGSSQFSDY PSVRPYHSSM FYPQQMM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ711109	0.0	KJ711109.1 Pinus tabuliformis clone PtSPL2 SPL2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K0M7E4	0.0	A0A0K0M7E4_PINTB; SPL2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	7e-07	squamosa promoter binding protein-like 9