PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048190-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 408aa    MW: 46796 Da    PI: 5.0554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048190-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-5211245128
               NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       frFhPtdeelv +yLk+kv++ k+el ++i+e+d+yk+ePwdLp k  + ++++ewyfF+ rd+ky++g+r+nrat++gyWkatgkd++v s 
  PSME_00048190-RA   1 FRFHPTDEELVAYYLKRKVHSWKIEL-DIIPEIDLYKCEPWDLPeKsFLPGNDQEWYFFCLRDRKYPNGSRTNRATEAGYWKATGKDRKVSS- 91 
                       8*************************.99**************95334556889*************************************9. PP

               NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + + +g+kk+Lvf++grap+g++tdWvmheyrl
  PSME_00048190-RA  92 HMRPIGMKKSLVFHTGRAPHGSRTDWVMHEYRL 124
                       999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-601147IPR003441NAC domain
PROSITE profilePS5100557.4241147IPR003441NAC domain
PfamPF023651.1E-261124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
FRFHPTDEEL VAYYLKRKVH SWKIELDIIP EIDLYKCEPW DLPEKSFLPG NDQEWYFFCL  60
RDRKYPNGSR TNRATEAGYW KATGKDRKVS SHMRPIGMKK SLVFHTGRAP HGSRTDWVMH  120
EYRLDENECE ASASLQEGYA LCRVFKKNGP GQRIGLHSSA VVANDFSCGL PNSCNKNMLL  180
SLEEQSEEKP CPFSHVEAED QTNSREISSQ VINDRTVDDG VSERKLQLAS YGTASCSFPS  240
GHSKVSEPCS ALQYIVELNE TSRSHKVGDF RHIKSCLSLS DSTMRTTHLV EEQVHSSLEE  300
EEILKQLYID AQENSYVSQF ITGDVADIHK NEDYLQLDDF VPDWNIENTL KNPRNSIGQE  360
DADPFSLNSF GLQDYNSESF NDRPEQLLFF NRFLRQNSNP ESLACMLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-51115324174NAC domain-containing protein 19
3swm_B2e-51115324174NAC domain-containing protein 19
3swm_C2e-51115324174NAC domain-containing protein 19
3swm_D2e-51115324174NAC domain-containing protein 19
3swp_A2e-51115324174NAC domain-containing protein 19
3swp_B2e-51115324174NAC domain-containing protein 19
3swp_C2e-51115324174NAC domain-containing protein 19
3swp_D2e-51115324174NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-82NAC domain containing protein 57