PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00048166-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 413aa MW: 46139.2 Da PI: 5.3836

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00048166-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.7e-11	198	239	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR ++N+++ +Lr+l+Pk +K++Ka+i+ ++ Y+++Lq PSME_00048166-RA 198 ERRRRGQLNERLYTLRSLVPKI-----TKMDKASIVGDTISYVQDLQ 239 9******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.71	189	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.05E-15	195	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-14	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-15	198	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.98E-13	198	243	No hit	No description
Pfam	PF00010	6.8E-9	198	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MEHTGRGGIS PIYANSSVNM FEFNTVALME AAATTTTGHV GDHNGLLFCS TDLMQGNCGP 60 GSLIPISPSS SSISHVVDLQ KWSDCVWASH DLPVKSDQCF QPPFNPETSA EHLRVYPPPS 120 FIQDQDQDYF HLYGGGLDIP YHDTNIYGAN SIPQGRVDKK EPNCGYSSDE MDDMKDDQDE 180 KAGSQDGRSS QPMTLHWERR RRGQLNERLY TLRSLVPKIT KMDKASIVGD TISYVQDLQK 240 ELKDTQTEIE DLRSNLKCQN DSTADLERNH TVLSDMENEI QSYNVQENGN GATDHHPNSA 300 ISDLDYEVQS NEEGNSNSQA PKPSTLDVNV TKIHDRTFHI RLYFKKKPGA LIRLMRALES 360 IQLDFHNANL TSVHGHMIKT ATVKIEKPHL PMEADALRGA ILEATSKYGF RTT

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MEHTGRGGIS PIYANSSVNM FEFNTVALME AAATTTTGHV GDHNGLLFCS TDLMQGNCGP  60
GSLIPISPSS SSISHVVDLQ KWSDCVWASH DLPVKSDQCF QPPFNPETSA EHLRVYPPPS  120
FIQDQDQDYF HLYGGGLDIP YHDTNIYGAN SIPQGRVDKK EPNCGYSSDE MDDMKDDQDE  180
KAGSQDGRSS QPMTLHWERR RRGQLNERLY TLRSLVPKIT KMDKASIVGD TISYVQDLQK  240
ELKDTQTEIE DLRSNLKCQN DSTADLERNH TVLSDMENEI QSYNVQENGN GATDHHPNSA  300
ISDLDYEVQS NEEGNSNSQA PKPSTLDVNV TKIHDRTFHI RLYFKKKPGA LIRLMRALES  360
IQLDFHNANL TSVHGHMIKT ATVKIEKPHL PMEADALRGA ILEATSKYGF RTT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	5e-28	bHLH family protein