PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047765-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 485aa    MW: 53387.7 Da    PI: 7.4466
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047765-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.7e-21134193357
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       +R+++t++q+++Le +++   r+p+ae++e+++++l    +++ ++V++WFqN++a+e++
  PSME_00047765-RA 134 TRWNPTPDQIRILEMFYKGgMRTPNAEQIEHITAQLrqygKIEGKNVFYWFQNHKARERQ 193
                       7*****************99**************************************97 PP
2Wus_type_Homeobox117.56.2e-38133195365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         tRW+Ptp+Qi+iLe+ yk G+rtPn+e+i++ita+L++yGkie+kNVfyWFQN+kaRerqkq
   PSME_00047765-RA 133 GTRWNPTPDQIRILEMFYKGGMRTPNAEQIEHITAQLRQYGKIEGKNVFYWFQNHKARERQKQ 195
                        69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.22129194IPR001356Homeobox domain
SMARTSM003894.9E-8131198IPR001356Homeobox domain
SuperFamilySSF466897.27E-12131199IPR009057Homeodomain-like
CDDcd000861.21E-6134195No hitNo description
PfamPF000461.6E-18134193IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-7135193IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEAKMANINS VTTMPFACEN GGCNKRFRPL VPKLTLSPSS AAPMANAVWS TQQSHDQYNQ  60
LQQAFCSATS GNSVSMSAAA CLLEPKINRL DGKADENANQ RSQIDRLIKG DQQNMKEEQA  120
ESCAVQSQPA ASGTRWNPTP DQIRILEMFY KGGMRTPNAE QIEHITAQLR QYGKIEGKNV  180
FYWFQNHKAR ERQKQKRNSS MQQVAATAAA KKTPTTLTVD NPNELHNPNS NGTYSLYNLP  240
FAAMSEDSRL MFASSSLLAM PCSKGLAASL AQAGVDVRTP ASTGAKRDGL EVLKRNSHGP  300
PQVQMNDEGS PSKNSMIWDS INSSGEGIIT NLALSQQAAA DMPVNVNSCK RKNRMWQIMS  360
PNEELGLHTE SSSESICLQT SSDPINPSEY IDEEDHRKLQ TLQLFPLRPE GSLKSKGTET  420
NTDNSMLSLH VNPSSICPYP FREFNKSAES STQKGSVFEE QKYSKAADFF PNISSADYSF  480
LNSLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6772430.0EF677243.1 Picea sitchensis clone WS02764_C24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8660.0R9R866_PICAB; WUSCHEL homeobox protein WOX4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.18e-37WUSCHEL related homeobox 4