PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047140-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 294aa    MW: 32220.2 Da    PI: 8.2263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047140-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.7e-06162188531
                       HHHHHHHHHHHHHHHHHHHHCTSCCC. CS
               HLH   5 hnerErrRRdriNsafeeLrellPkas 31 
                       h+ +Er+RRd +++  ++L +llP+ +
  PSME_00047140-RA 162 HKLVERQRRDTMKTLCSTLLSLLPEEY 188
                       99**********************964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-6162191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEELWRRSNR DPFEPSSSSQ AAASLPHYHG NMDTSEGIQI RTAIKSVKFG ESGNDIDVDA  60
TAAKVFDAFS TKRPHDYGLL GTASSGPVMQ LDQTIDDDSS WAVKQCSQKI VANVGDQAQT  120
LTFNSLQANS LLNSRCKKKK AGRAGGNDHM AKSLCTENGH FHKLVERQRR DTMKTLCSTL  180
LSLLPEEYHK VEKKRGELSL SGTVKTFSNS SRVYEKLPAS QTCSPSHVPV TLPTVRVSKV  240
GSGIQVTANT LSNQIDFSSL LLVLEEAGVE VESATLFAIN DRVFHSIYSK VFSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-