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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00046874-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 186aa MW: 20999.9 Da PI: 10.298 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00046874-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.9 | 9.9e-54 | 17 | 145 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
ppGfrFhPtdeelv +yLkkk+++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l+
PSME_00046874-RA 17 PPGFRFHPTDEELVIHYLKKKASSTPLPV-TIIAEIDLYKFDPWELPGKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILT 108
9****************************.89***************999999***************************************9 PP
NAM 95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++++vg+kk Lvfy gr pkg kt+W+mheyrl
PSME_00046874-RA 109 StlgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 145
99999999***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 186 aa
Download sequence Send
to blast |
MESPASFSGS HQQPQFPPGF RFHPTDEELV IHYLKKKASS TPLPVTIIAE IDLYKFDPWE 60
LPGKANFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTST LGGTQKVGVK 120
KALVFYGGRP PKGIKTNWIM HEYRLADSGA RPSSFPNKKG SLRLDDWVLC RIYKKNGHSQ 180
RVQGAE
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-75 | 13 | 181 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-75 | 13 | 181 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-75 | 13 | 181 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-75 | 13 | 181 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-75 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 3e-75 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 3e-75 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 3e-75 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 3e-75 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 3e-75 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 3e-75 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 3e-75 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 3e-75 | 13 | 181 | 14 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 3e-75 | 13 | 181 | 14 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
