PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046864-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 1099aa    MW: 123686 Da    PI: 4.9118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046864-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-131661248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  PSME_00046864-RA 16 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 61
                      78*****************************.************986 PP
2Myb_DNA-binding32.61.8e-1068111248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  PSME_00046864-RA  68 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 111
                       68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.0081065IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-181364IPR009057Homeodomain-like
SMARTSM007177.0E-151463IPR001005SANT/Myb domain
PfamPF139215.2E-131878No hitNo description
CDDcd001673.81E-121861No hitNo description
SuperFamilySSF466897.91E-2141115IPR009057Homeodomain-like
CDDcd116593.77E-3163114No hitNo description
Gene3DG3DSA:1.10.10.603.7E-1465112IPR009057Homeodomain-like
PROSITE profilePS5129416.44366115IPR017930Myb domain
SMARTSM007171.7E-1266113IPR001005SANT/Myb domain
PfamPF118318.1E-57416664IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1099 aa     Download sequence    Send to blast
GYRENSGKMR IMIKGGVWKN TEDEILKAAV MKYGKNQWAR ISSLLVRKSA KQCKARWYEW  60
LDPSIKKTEW TREEDEKLLH LAKLMPTQWR TIAPIVGRTP SQCLERYEKL LDAACVKDES  120
YEPADDPRKL RPGEIDPNPE SKPARPDPVD MDEDEKEMLS EARARLANTR GKKAKRKARE  180
KQLEEARRLA SLQKRRELKA AGIEGKQRRR KRKGIDYNAE IPFEKKPPPG FFDVSDEETR  240
QVEQSIFPTT IEELEGKRRV DVEAQLRKQD VARNKIMQRH DAPSAVMQVN KLNDPEAVRK  300
RTKLMLPSPQ ISDRELEEIA KMGYASDLIL GEDELAEGSG AARALLANYG QTPRLGMPPL  360
RTPQRTPGGK GDAIMMEAEN QARLRESQTP LFGGENPELH PSDFSGVTPK KREIQTPNPI  420
STPLHTPGAV GLTPRIGMTP SREFSMTPRG TPIRDELHIN EGMETPDSSK AESRRQAEIR  480
RNLLAGLSDL PVPKNEYQIV VPELPTEDIE VGHQMEEDMS DKLARDRAEE AARQAALLRK  540
RSKVLQRDLP RPPISSVDFI KNSLTGVDDA KGSFAPTNFI EQADELIRKE LVSLLEHDNA  600
KYPFEEDSVK EKKKGSKGAP NGRPQVPIPY IDDFHEEEIN EAAHLIEEEV SILRVGMGHE  660
DASVDDFSEA HDACLEDMMY FPGRNSYGLG SVASVTDKLA ATQNDFENVR SHMESETRKA  720
LRLEQKLKVL TQGYNMRAGK LWTQIEAAFK QADTSGTELE CFRSLHKQEQ LAASNRIEGL  780
REAVNQQKEF ERQLQLRYQN LLVEQDNVQR LLQDHKENMA LQRDSRKENA VDTQQSESTI  840
AQADDGHLEN SNSEAQPFTI SSIHNDVEML DVSGIVEKKT GDNSSDMQID HVPQSDGQNP  900
VLEDEIVEQN PQETKEVVQS DAQNMVIQDE NIEHFNKQLT ELITQSDGQN SVFKDEDIEQ  960
RKHSTSPVAH SDEQMKHSTS PVAQSDEHND AIHSENNDIN KDAASVSVDM QLPIQNIDMD  1020
SSHGHLKEQL NDSDLSAQDV SEQTQQSSGD KTDNVMGVCT VTSQEPVPLC KSDTEGEIIV  1080
SVAQVDTAAA HTEDVNPHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.0108093799Cell division cycle 5-like protein
5xjc_L0.0108093799Cell division cycle 5-like protein
5yzg_L0.0108093799Cell division cycle 5-like protein
5z56_L0.0108093799Cell division cycle 5-like protein
5z57_L0.0108093799Cell division cycle 5-like protein
5z58_L0.0108093799Cell division cycle 5-like protein
6ff4_L0.0108093799Cell division cycle 5-like protein
6ff7_L0.0108093799Cell division cycle 5-like protein
6icz_L0.0108093799Cell division cycle 5-like protein
6id0_L0.0108093799Cell division cycle 5-like protein
6id1_L0.0108093799Cell division cycle 5-like protein
6qdv_O0.0108093799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193212KRRELKAAGIEGKQRRRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246794.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A200QAT20.0A0A200QAT2_9MAGN; SANT/Myb domain
STRINGXP_010246794.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]