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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
PSME_00045928-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
MYB |
| Protein Properties |
Length: 196aa MW: 22125.1 Da PI: 9.0165 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00045928-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.6 | 4.5e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEde l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl
PSME_00045928-RA 20 KGAWSKEEDEVLISYIEAHGQGCWRSLPKAAGLQRCGKSCRLRWINYL 67
79********************************************97 PP
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| 2 | Myb_DNA-binding | 60 | 5.2e-19 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg +++eEdel+++++ +lG++ W+ Ia+t++ gRt++q+k++w+++
PSME_00045928-RA 73 RGDFSQEEDELIIKLHSRLGNK-WSMIASTIP-GRTDNQIKNYWNTH 117
899*******************.*********.************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MGSHRDMGRS PCCEKAHTRK GAWSKEEDEV LISYIEAHGQ GCWRSLPKAA GLQRCGKSCR 60
LRWINYLRPD LKRGDFSQEE DELIIKLHSR LGNKWSMIAS TIPGRTDNQI KNYWNTHIKK 120
KLLKEGVDPY THLPIIPDHG SFGFSSGNPV LPKRGCKPSE TPGTYLGQRI SSTGHDHAYD 180
EDVNLDLSIT LPSLRS
|
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhou M, et al.
Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
Plant J., 2015. 84(2): p. 395-403
[PMID:26332741] - Lotkowska ME, et al.
The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
Plant Physiol., 2015. 169(3): p. 1862-80
[PMID:26378103] - Zhou M, et al.
LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
Plant Physiol., 2017. 174(3): p. 1348-1358
[PMID:28483877] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275]
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