PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045671-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 425aa    MW: 48552.8 Da    PI: 6.9452
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045671-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1324.2e-411092151106
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeelv++yL+kkv++k+++l +vik++d+yk+ePwdL++  k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  PSME_00045671-RA 109 VPPGFRFHPTDEELVDYYLRKKVAAKRIDL-DVIKDIDLYKIEPWDLQEkcKIGSeEQTEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK 200
                       69****************************.9***************952444442455********************************** PP

               NAM  91 evlskkgelvglkktL 106
                       ++++ k +l+g++ktL
  PSME_00045671-RA 201 AIYC-KLNLIGMRKTL 215
                       ****.999*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-42102227IPR003441NAC domain
PROSITE profilePS5100536.719109278IPR003441NAC domain
PfamPF023655.1E-19110216IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAATFGPLRA WTNVLELLSC DRACGKFDCG VDVKRARAVN CSLRVSALWT TAFESSRAAC  60
NICNSEIQEN SWSWRLELRV EGRSVGVAST NYFSLRKNYL FTMNTLSRVP PGFRFHPTDE  120
ELVDYYLRKK VAAKRIDLDV IKDIDLYKIE PWDLQEKCKI GSEEQTEWYF FSHKDKKYPT  180
GTRTNRATAA GFWKATGRDK AIYCKLNLIG MRKTLEEGWV VCRVFKKRIT TQRKGNDDTV  240
CWYEDQVGLL PELDSPKKLP QGGDMGYQLP FACKQELELH YHMSHDPFLQ LPQLESPKVP  300
CNASSSAPGK RAECSMPYNG FETGCNMEGH HGNANPQSAA TQEDQQAVNT YNEEQVTDWR  360
VLDKFVASQL SQEDVSKESR FPNETMYPIP DHMTVLMRQS NKHEQQADYA SNSNCDVDLW  420
SFAGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-3310921515118Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1020490.0BT102049.1 Picea glauca clone GQ0165_B14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264210.11e-140PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX26e-96NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1U8AN731e-139A0A1U8AN73_NELNU; NAC domain-containing protein 7
STRINGXP_010264210.11e-140(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.15e-88NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]