 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PSME_00045522-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
ERF |
| Protein Properties |
Length: 265aa MW: 29395.1 Da PI: 8.48 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00045522-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 62.5 | 9.1e-20 | 62 | 110 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+Wv+eIr+p++ + r++lg+f+t+e+Aa+a++ a+ +l+g
PSME_00045522-RA 62 YRGVRRRS-WGKWVSEIREPKK---KSRIWLGSFDTPEMAARAYDVAAFYLKG 110
9****887.**********854...6************************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MDKKASFLPD SMLASSTTDT EARSKSAPKG NNGMKRIRTQ DVASPSPPHN KSRLKLRQNP 60
AYRGVRRRSW GKWVSEIREP KKKSRIWLGS FDTPEMAARA YDVAAFYLKG KKHALLNFPE 120
LIDHLPQPVS LSPRDIQAAA AEAAVAFHSE SAGNSRRSCN AYKRERKSPK NPAVSYNEHA 180
ASSSDSETVR VVLSGQANTS NSLSVCTPTE CVVGNSECVV VEEDLFESFN LFTNLAEALL 240
LSPPPLFCIH EEEHNLEEGF LWSDF
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ117101 | 5e-72 | FJ117101.1 Pinus taeda isolate 4346 anonymous locus UMN_6348_01 genomic sequence. |
| GenBank | FJ117103 | 5e-72 | FJ117103.2 Pinus taeda isolate 4361 anonymous locus UMN_6348_01 genomic sequence. |
| GenBank | FJ117104 | 5e-72 | FJ117104.2 Pinus taeda isolate 4349 anonymous locus UMN_6348_01 genomic sequence. |
| GenBank | FJ117105 | 5e-72 | FJ117105.2 Pinus taeda isolate 4355 anonymous locus UMN_6348_01 genomic sequence. |
| GenBank | FJ117106 | 5e-72 | FJ117106.2 Pinus taeda isolate 4347 anonymous locus UMN_6348_01 genomic sequence. |
| GenBank | FJ117107 | 5e-72 | FJ117107.2 Pinus taeda isolate 4348 anonymous locus UMN_6348_01 genomic sequence. |
| GenBank | FJ117108 | 5e-72 | FJ117108.2 Pinus taeda isolate 4359 anonymous locus UMN_6348_01 genomic sequence. |
| GenBank | FJ117112 | 5e-72 | FJ117112.1 Pinus taeda isolate 4345 anonymous locus UMN_6348_01 genomic sequence. |
| GenBank | FJ117113 | 5e-72 | FJ117113.1 Pinus taeda isolate 4356 anonymous locus UMN_6348_01 genomic sequence. |
