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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00045149-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 226aa MW: 26423.2 Da PI: 8.7405 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00045149-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 141.7 | 4.1e-44 | 9 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
pGfrF Pt+eel+ +yLkk++++++ + ++ i+++d+y+++Pw+Lp + + +ek+w+fF++rd+k+ +r+nr tksgyWkatg+d++v
PSME_00045149-RA 9 IPGFRFYPTEEELLGFYLKKRLQRDHQPNLDIiIPTLDLYQYDPWELPvLASDVGEKQWFFFVPRDNKKC-RHRPNRLTKSGYWKATGSDRAV 100
69********************99997666666***************556677999**********975.79******************** PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++ + +glkk+Lvfykgrap g++t+W+m+ey++
PSME_00045149-RA 101 RNELCQCIGLKKILVFYKGRAPLGQRTEWIMNEYKM 136
**99999***************************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MNTEELTVIP GFRFYPTEEE LLGFYLKKRL QRDHQPNLDI IIPTLDLYQY DPWELPVLAS 60
DVGEKQWFFF VPRDNKKCRH RPNRLTKSGY WKATGSDRAV RNELCQCIGL KKILVFYKGR 120
APLGQRTEWI MNEYKMPDLS SSPSKIVSSH EQIKKVDMVL CRIYRKPTSQ NLDKEKLNFP 180
AGDESSYEYK CDSITFNGSS CQSNPMTEIN VSSSGEWRGN MFFYSK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-40 | 5 | 169 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-40 | 5 | 169 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-40 | 5 | 169 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-40 | 5 | 169 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-40 | 5 | 169 | 14 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 3e-40 | 5 | 169 | 14 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
