PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044347-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 443aa    MW: 50840.4 Da    PI: 6.3298
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044347-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox391.4e-1249106254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R+++tkeq ++L   Fe+   + s++e++ ++++l    ++++++V++W++Nr+++
  PSME_00044347-RA  49 KPRWKPTKEQKRILIPKFESgMVKRSRHEIKTITAQLqefgQVEDANVFYWYHNRKYR 106
                       89*****************99***********************************98 PP
2Homeobox48.51.5e-15227284254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R+++t+eq ++L   Fe+   +ps++e++ ++++l    ++++++V++WF+Nr+++
  PSME_00044347-RA 227 KPRWKPTEEQKRILIPKFESgMVKPSRHEIKTITAQLqefgQVEDANVFYWFHNRKYR 284
                       89*****************99***********************************98 PP
3Wus_type_Homeobox69.75e-2348106260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW Pt+eQ +iL   ++sG++  +++ei+ ita+L+e+G++ed+NVfyW+ Nrk R
   PSME_00044347-RA  48 TKPRWKPTKEQKRILIPKFESGMVKRSRHEIKTITAQLQEFGQVEDANVFYWYHNRKYR 106
                        689******************************************************88 PP
4Wus_type_Homeobox78.49.8e-26226284260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW Pt+eQ +iL   ++sG++ P+++ei+ ita+L+e+G++ed+NVfyWF Nrk R
   PSME_00044347-RA 226 TKPRWKPTEEQKRILIPKFESGMVKPSRHEIKTITAQLQEFGQVEDANVFYWFHNRKYR 284
                        689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-545110IPR009057Homeodomain-like
SMARTSM003890.03147114IPR001356Homeobox domain
PfamPF000463.2E-1049106IPR001356Homeobox domain
SuperFamilySSF466897.56E-9223286IPR009057Homeodomain-like
PROSITE profilePS500719.248223288IPR001356Homeobox domain
SMARTSM003890.0015225292IPR001356Homeobox domain
CDDcd000867.43E-4227284No hitNo description
Gene3DG3DSA:1.10.10.608.8E-5227284IPR009057Homeodomain-like
PfamPF000463.4E-13227284IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
SWTSMFKGKP STSNNQGYGS SNSSAISVQR PCYEGTSSAN EERSWHKTKP RWKPTKEQKR  60
ILIPKFESGM VKRSRHEIKT ITAQLQEFGQ VEDANVFYWY HNRKYRIFNR VERTEKNTKA  120
IINVASNTAD SLYNTGESYS SYVLEDPFLT QDDPFFTHQD RFFHTGECSM QAVATAAGSW  180
TSMFKVKPST SDNQGYGSSN FSAISVQRPC YEGTSSANEE RSWHKTKPRW KPTEEQKRIL  240
IPKFESGMVK PSRHEIKTIT AQLQEFGQVE DANVFYWFHN RKYRIFDRVE RTEKNTKAII  300
NVASNTADSL YNTGESYSFY VLEDPFFTQD DPFFTHHDNP FFIHQEDFHM QMNEEMTNDQ  360
CSSMQAVATA AGLFNEGTFA DTTGTIFPYL ISPILVEVLV GSINVRDAFG ENAVLLHSTG  420
EPVLVSEWGF TLEFLQQGAE YYV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH99e-87D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.17e-22homeobox-3