PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044188-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 358aa    MW: 40847.4 Da    PI: 9.6344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044188-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-13755148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg WT++Ed +l ++++ +G g +W+  +++ g++R++k+c++rw +yl
  PSME_00044188-RA  7 RGVWTKQEDIILSEYIRIHGDGcRWTNLPKKTGLKRSGKSCRLRWTNYL 55
                      899********************************************97 PP
2Myb_DNA-binding51.81.9e-1661106148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00044188-RA  61 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 106
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.49155IPR017930Myb domain
SuperFamilySSF466892.83E-255102IPR009057Homeodomain-like
SMARTSM007173.0E-11657IPR001005SANT/Myb domain
PfamPF002492.6E-12755IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-20962IPR009057Homeodomain-like
CDDcd001672.98E-81055No hitNo description
PROSITE profilePS5129426.51756110IPR017930Myb domain
SMARTSM007174.0E-1660108IPR001005SANT/Myb domain
PfamPF002494.4E-1561106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2563110IPR009057Homeodomain-like
CDDcd001671.37E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVKALHRGVW TKQEDIILSE YIRIHGDGCR WTNLPKKTGL KRSGKSCRLR WTNYLRPDIK  60
RGNISPDEED LIIRLHRLLG NRWSLIAGRL PGRTDNEIKN YWNTHLSKKL RLSMKQSETS  120
SRTKNLKTTP NHLKTTPNHL KTTPNHIAFK TIAVKITRAS TVRPIGFNGY GISDYRCSDG  180
AFKSAVQGPK IYHIVFKTIA VKIARASTVR PISFYGYGFS DYRCSDEAFK SCKNKESTER  240
ISFVIADANL VGGRNTTTYS QSSLEEEESG PYIDHIAGDI ATLHDNLFDL NELSFTQWNL  300
PFSPSDCSTD VELEEFNRVA AAQMNEFEDI LVLLSKALKF LRSLTMEEWE NFTTIQNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-22511025128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1167521e-100BT116752.1 Picea glauca clone GQ03806_A01 mRNA sequence.
GenBankKU1312191e-100KU131219.1 Picea abies transcription factor MYB30 mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-51myb domain protein 3