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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PSME_00044155-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family |
MYB |
| Protein Properties |
Length: 264aa MW: 29815.5 Da PI: 8.826 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00044155-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.1 | 1.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +l+ +++ +G g+W ++++ g+ R++ +c++rw++yl
PSME_00044155-RA 14 KGAWTQEEDHRLIAYIRNHGEGSWCSVPKAAGLLRCGRSCRLRWNNYL 61
79******************************99*************7 PP
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| 2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 68 | 111 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
g+++++Ed+l+++++ +G++ W+ I+++++ gRt+++++++w+++
PSME_00044155-RA 68 GNFSEQEDDLIIQLHSIFGNK-WSIISKRLP-GRTDNEIRNHWNSH 111
89*******************.*********.***********987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MGKPPCCDKA HHNKGAWTQE EDHRLIAYIR NHGEGSWCSV PKAAGLLRCG RSCRLRWNNY 60
LRPDLRHGNF SEQEDDLIIQ LHSIFGNKWS IISKRLPGRT DNEIRNHWNS HIKKKLVKRG 120
LDPQTHRPLC SRQNSNTARS SQPAPKCQLV PEFERSGTSE ITDFFQQDRL ERSSPVHPIS 180
SDGEEHPDLN LDLCISLACN SSRASNRVTS VDDLCIRLPR NSSRASNRVT ASGLDLCISL 240
PYNSSWASNR VTSGLDLCIS LPSR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Schenke D,Cai D,Scheel D
Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
Plant Cell Environ., 2014. 37(7): p. 1716-21
[PMID:24450952] - Zhou M, et al.
Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
Plant J., 2015. 84(2): p. 395-403
[PMID:26332741] - Zhang J, et al.
Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
Plant Sci., 2016. 248: p. 82-91
[PMID:27181950] - Zhou M, et al.
LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
Plant Physiol., 2017. 174(3): p. 1348-1358
[PMID:28483877] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275] - Verma N,Burma PK
Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
Plant J., 2017. 92(3): p. 481-494
[PMID:28849604]
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