PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00042787-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 394aa MW: 42961.7 Da PI: 8.1232

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00042787-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.6e-06	350	375	5	30
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 h+++Er RR+ri +++ L+el+P++ PSME_00042787-RA 350 HSIAERLRRERIAERMKALQELVPNS 375 99**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-7	343	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.182	345	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-6	347	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-4	349	377	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MPRGQISSRQ DILASLVNFL VDMQPSTSLL GTGPVQSVSS VTSCLSSSPE VALQEQMHSQ 60 QQQINNQQQH FSSQFDQTNQ PHQNMEDFLE QMFLMPSWSD VVVKTAPWEF NPANASQGNN 120 ASNNNNSPQN LQSNTQRLFT MPLLPSGIGG QGLNSQENEG HAGEHMQYSN YDESQFLASR 180 LRQHPLSGNS SMNQTPNQLS TGNATASQLL ASMGNSPRGT AVMTRSPSTG GSCNGSDGGM 240 LPLPLSLGQA GKSGEMNETR SRDEIEASFK SANNARDSNL GGLFPPFPGS PRGVRPPGQN 300 FHPQSGQVPM QGYGRMPQPQ YQNPPPTGVG AAPPVRPRVR ARRGQATDPH SIAERLRRER 360 IAERMKALQE LVPNSNKVLF FSAFNYQLCF LHIY

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MPRGQISSRQ DILASLVNFL VDMQPSTSLL GTGPVQSVSS VTSCLSSSPE VALQEQMHSQ  60
QQQINNQQQH FSSQFDQTNQ PHQNMEDFLE QMFLMPSWSD VVVKTAPWEF NPANASQGNN  120
ASNNNNSPQN LQSNTQRLFT MPLLPSGIGG QGLNSQENEG HAGEHMQYSN YDESQFLASR  180
LRQHPLSGNS SMNQTPNQLS TGNATASQLL ASMGNSPRGT AVMTRSPSTG GSCNGSDGGM  240
LPLPLSLGQA GKSGEMNETR SRDEIEASFK SANNARDSNL GGLFPPFPGS PRGVRPPGQN  300
FHPQSGQVPM QGYGRMPQPQ YQNPPPTGVG AAPPVRPRVR ARRGQATDPH SIAERLRRER  360
IAERMKALQE LVPNSNKVLF FSAFNYQLCF LHIY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	354	359	RLRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115043	0.0	BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.