PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042627-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 356aa    MW: 39872.6 Da    PI: 5.4647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042627-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-171562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+ll++++++ G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00042627-RA 15 KGPWTPEEDKLLLNYIRKNGHGSWRALPELAGLLRCGKSCRLRWMNYL 62
                      79******************************99************97 PP
2Myb_DNA-binding48.22.6e-1568111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+eE+  +++++  lG++ W++Ia+ ++ gRt++++k++w +
  PSME_00042627-RA  68 RGSFTEEEERTIIQLHGILGNR-WSAIASQLP-GRTDNEIKNFWST 111
                       89********************.*********.***********65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2261062IPR017930Myb domain
SuperFamilySSF466892.2E-3012109IPR009057Homeodomain-like
SMARTSM007179.0E-141464IPR001005SANT/Myb domain
PfamPF002491.8E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231669IPR009057Homeodomain-like
CDDcd001671.35E-101762No hitNo description
PROSITE profilePS5129424.57363117IPR017930Myb domain
SMARTSM007175.4E-1567115IPR001005SANT/Myb domain
PfamPF002494.1E-1468111IPR001005SANT/Myb domain
CDDcd001672.04E-1070109No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2570117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMGRVPCSEK TGLKKGPWTP EEDKLLLNYI RKNGHGSWRA LPELAGLLRC GKSCRLRWMN  60
YLRPDIKRGS FTEEEERTII QLHGILGNRW SAIASQLPGR TDNEIKNFWS TRLKNRLLKM  120
GLDPATHAPK EANLTADPER LEALALARHK AQWENARLEA EARLSRESLL MLSSNSAAGY  180
HTNNTAETIT TPASNNPVPC TDYFLKIWNS EAGTAFRNKE THHPNREGDN SEIPVISSVS  240
SMMCCAASTG QNSCDESLNP IDKDKQNGSQ ECGDCNLKTG GVFSCFADTA TCKMEDKTTE  300
ELNFPELLLD FPDNDDNSNI QSELITAFQQ KPASPWPQLH DEDFWSNLSF IDHDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027927284.11e-98transcription factor MYB41-like
TrEMBLA0A222UAM73e-99A0A222UAM7_GINBI; R2R3MYB15
STRINGVIT_15s0046g03190.t012e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.18e-88myb domain protein 17