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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PSME_00042385-RA |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family |
NAC |
Protein Properties |
Length: 443aa MW: 49652.2 Da PI: 6.5876 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00042385-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 105.5 | 6.9e-33 | 58 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77
lp G++F+Ptd+el+ e+L+ k++ ++ ++++ i+ +i++++P++Lp ++ + +fF++ +k+y+tg+rk+r+
PSME_00042385-RA 58 LPSGVKFDPTDQELI-EHLQGKISCDNsaphplIDEFIPtIEGGdGICYTHPEKLP-GISRDGLVRHFFHRPSKAYTTGTRKRRKiqtacdes 148
699************.99****999887886543333333555545**********.565666688******************856666665 PP
NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk+++vl+ +g +g+kk+Lv+y g+++k+ekt+Wvmh+y+l
PSME_00042385-RA 149 sEGETRWHKTGKTRPVLV-NGMPKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 201
444778************.999***********5547999999*********98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 443 aa
Download sequence Send
to blast |
MILNSVQQNG LLMAGKYRNA TSSSQLIDAK LEEYRIKKCP SCGHQIERKE ALQDWPGLPS 60 GVKFDPTDQE LIEHLQGKIS CDNSAPHPLI DEFIPTIEGG DGICYTHPEK LPGISRDGLV 120 RHFFHRPSKA YTTGTRKRRK IQTACDESSE GETRWHKTGK TRPVLVNGMP KGCKKILVLY 180 TNFGKHRKPE KTNWVMHQYH LGTQEEEKEG ELVVSKVFYQ TQPRQCNWEK ATDAGDACKA 240 SITEATQVSE RCAAGETVSS TDRHIYSSYN PLEQQAKVTH SSHNLSVAQS RSESSDQGTD 300 SKSPESTHGT PSFGDGISDF HLNKDTHNQL VKPCNHCNNV IIRDDQRAGG SQEEPSRDQL 360 PSLHESQFTN LLFCHETLQA GALNYNAKFQ RYGSLDLDEL AAELGLPLHD NTNTEILDMA 420 SVTKEVQEAL SNSQEADWLK YFR
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3ulx_A | 1e-12 | 58 | 201 | 15 | 140 | Stress-induced transcription factor NAC1 |