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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PSME_00042313-RA |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family |
NAC |
Protein Properties |
Length: 333aa MW: 37608.9 Da PI: 7.1693 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00042313-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 167.4 | 4.9e-52 | 16 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelv +yLkkk ++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd ky++g r+nra++sgyWkatg+dk++l
PSME_00042313-RA 16 LPPGFRFHPTDEELVIHYLKKKESSTPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDMKYPNGARPNRAATSGYWKATGTDKPIL 107
79****************************.89***************8888999*************************************9 PP
NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++++vg+kk Lvfy gr pkg kt+W+mhey+l
PSME_00042313-RA 108 IStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYHL 145
998888899****************************8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MESPASFSGS HQQPQLPPGF RFHPTDEELV IHYLKKKESS TPLPVTIIAE IDLYKFDPWE 60 LPGKATFGEQ EWYFFSPRDM KYPNGARPNR AATSGYWKAT GTDKPILIST SGGTQKVGVK 120 KALVFYGGRP PKGIKTNWIM HEYHLADSGA RPCSFPNKKG SLRLDDWVLC RIYKKNGHSQ 180 RVQGAERDES LSTDDPFIEG LLNDEAMDGN GNISRLPHQV HSSDLSHNNF SNSNDNNSDF 240 QFEVVPKQEA LAVDNGNKFN SLKRTLSLAA FGDEEIHSAK RFNDIYNVNN NVSALLNSMQ 300 PNQNFQQQNF LSALTDSQQN FRLPYIHNMH WSS
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-73 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-73 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-73 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-73 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-73 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-73 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-73 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-73 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |