PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042065-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 199aa    MW: 22609.8 Da    PI: 9.8083
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042065-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEde+l+  ++ +G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00042065-RA 14 KGAWTKEEDERLIAHIRTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding56.66.1e-1867111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++eEdel+++++ +lG++ W++Ia ++  gRt++++k++w+++
  PSME_00042065-RA  67 RGNFSEEEDELIIKLHSLLGNK-WSLIAGRLS-GRTDNDIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.169961IPR017930Myb domain
SuperFamilySSF466892.05E-2912108IPR009057Homeodomain-like
SMARTSM007179.4E-141363IPR001005SANT/Myb domain
PfamPF002494.9E-151461IPR001005SANT/Myb domain
CDDcd001674.03E-111661No hitNo description
PROSITE profilePS5129428.15462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-2765116IPR009057Homeodomain-like
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002495.0E-1667111IPR001005SANT/Myb domain
CDDcd001675.31E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGRSPCCEKA HTKKGAWTKE EDERLIAHIR THGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLRRGNF SEEEDELIIK LHSLLGNKWS LIAGRLSGRT DNDIKNYWNT HIKRKLLSRG  120
LDPQTHRPLG NPSCPSWPAP GHGFSVFQSP RRLEISDFFQ YELSKNSPME LAASKDGKHP  180
ELTLDLSMSF PSHLSPAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012541e-144BT101254.1 Picea glauca clone GQ0082_F08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028718.12e-91PREDICTED: myb-related protein 308
SwissprotP813932e-86MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A3G6JFH71e-113A0A3G6JFH7_PINTA; Myb-related protein 4
STRINGXP_010028718.18e-91(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-87myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]