PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00041975-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 412aa MW: 45356.5 Da PI: 6.6955

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041975-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	1e-13	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT +Ed +l +++k + W++Ia +++ gRt++++k++w++ PSME_00041975-RA 10 RGPWTCDEDVRLTNYIKAHREAGWALIAGRIP-GRTDNEIKNYWNTN 55 89****************************.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.443	1	60	IPR017930	Myb domain
SuperFamily	SSF46689	7.48E-14	7	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-17	8	61	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-10	9	58	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-12	10	56	IPR001005	SANT/Myb domain
CDD	cd00167	2.13E-9	12	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MGRTPLALKR GPWTCDEDVR LTNYIKAHRE AGWALIAGRI PGRTDNEIKN YWNTNLSKKL 60 ISQGINPRTH KHFSEPQDKG SNSGEREASL KSQWENNTTI PARSIAERRA DHLQAMPSKG 120 GGAIAGHDNQ DDRASTAWPP LNNQFPQASL AYNPTPSASL AIHFLSRYSV IYSMTNAFQE 180 YTNYLLCFPG ILLHSTNTNN IGSKQSYFDP LMPCKAFRSS ARDGVGRYDF DQNLLKNPVT 240 SSNDMIASTV RLSSGLITAP FATQFKSSHA FLSGNALLNG KHAGMSSLQS LQDFETNPDS 300 SFIVNPYEEA DSHQLSHTSC VASEQNAAAC SCHYPIIPTV MGAALGDFNS DIFPSLLKSF 360 GNEELMQLEE GYSADTSIAQ NVQACLLNED KAENLTSYDL LTKLCRSSQY HP

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MGRTPLALKR GPWTCDEDVR LTNYIKAHRE AGWALIAGRI PGRTDNEIKN YWNTNLSKKL  60
ISQGINPRTH KHFSEPQDKG SNSGEREASL KSQWENNTTI PARSIAERRA DHLQAMPSKG  120
GGAIAGHDNQ DDRASTAWPP LNNQFPQASL AYNPTPSASL AIHFLSRYSV IYSMTNAFQE  180
YTNYLLCFPG ILLHSTNTNN IGSKQSYFDP LMPCKAFRSS ARDGVGRYDF DQNLLKNPVT  240
SSNDMIASTV RLSSGLITAP FATQFKSSHA FLSGNALLNG KHAGMSSLQS LQDFETNPDS  300
SFIVNPYEEA DSHQLSHTSC VASEQNAAAC SCHYPIIPTV MGAALGDFNS DIFPSLLKSF  360
GNEELMQLEE GYSADTSIAQ NVQACLLNED KAENLTSYDL LTKLCRSSQY HP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LNN4	2e-97	B8LNN4_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-19	myb domain protein 6