PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041957-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRAS
Protein Properties Length: 567aa    MW: 62069.8 Da    PI: 4.169
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041957-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS204.94.6e-631885652374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        +lL +cAea+s+g + l++ +L+rl+ l+sp+g ++m+R+a y+  AL +  ++  s   + l+p +++++++++ l alkl++ + P++++
  PSME_00041957-RA 188 LHLLKACAEAMSHGAQDLVEVILCRLRGLVSPTGsSTMERVAYYLFDALLHSNVN--SLSLAHLKPANDKRSTQDHFLGALKLLHLAYPYIQI 278
                       799*******************************99************9776666..23334578888888899******************* PP

              GRAS  94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                        h+taNq Ilea++ +      +HiiDfdi++G+QWp+L++aL  R+++  +lRiT+++  + +  s     +tg+rL+++A+++g++f+f+ 
  PSME_00041957-RA 279 PHFTANQCILEALSAAggaaVGIHIIDFDIMEGAQWPPLMEAL--RNNDVSHLRITAIKWTQDKedSLPYSGNTGRRLSEYASSVGIQFSFEE 369
                       *************9987744446******************98..779999********9776677778889********************9 PP

              GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve..qeadhnsesFlerflealeyysalfdsl 271
                          k l+++ ++    ++gE  +Vn++ ql ++l  ++  +se  e+     +l+P  v+++   + a+++s++Fle f+++le   ++fdsl
  PSME_00041957-RA 370 TDLKGLKEVAPS----QEGEIAIVNCIWQLPHML--NLRNKSELFEFFVGTGHLNPVAVTLATgpHGAERDSANFLESFCRCLEQLCTIFDSL 456
                       544455555444....46****************..666666679999999**********973356999*********************** PP

              GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl....eeaGFkpvplsekaakqaklllrkvksdg.yrve.eesgsl 358
                       ea+lp++  + +++Er ++g++ +  v  + ++   +     + ++ +     ++G+++ ++s+++a+ ak+ l   ++ g y+ve    + l
  PSME_00041957-RA 457 EAGLPEHGLATAMIERIFFGPAMSRRVVSSSTACGDDAGLSDTRESNVvdlpLKCGYSECSISSNNAMLAKYSLLCSGGSGsYEVElVGCHRL 549
                       **********************99888777776444433333333332111157***********9999999888777555499996568899 PP

              GRAS 359 vlgWkdrpLvsvSaWr 374
                       vl W  +pLv+vS W+
  PSME_00041957-RA 550 VLKWGPNPLVWVSTWK 565
                       9**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.145161543IPR005202Transcription factor GRAS
PfamPF035141.6E-60188565IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
METSWFSEQD WDDIFNINPP HIDWGNNTNT QSAAVELLDV DLDASKWLSW AALIIDDNNG  60
CSVNNIELPA DSQAVENYLM DADLQDDIEL PADLQAVENY LMDADLQDAT NNIEEDPMSS  120
NPSDDIILQC PINNTDRDII IDDPAALIAW DQLANSDCAV VTNQGGLSSA SIDLGALDNM  180
EYKGLRLLHL LKACAEAMSH GAQDLVEVIL CRLRGLVSPT GSSTMERVAY YLFDALLHSN  240
VNSLSLAHLK PANDKRSTQD HFLGALKLLH LAYPYIQIPH FTANQCILEA LSAAGGAAVG  300
IHIIDFDIME GAQWPPLMEA LRNNDVSHLR ITAIKWTQDK EDSLPYSGNT GRRLSEYASS  360
VGIQFSFEET DLKGLKEVAP SQEGEIAIVN CIWQLPHMLN LRNKSELFEF FVGTGHLNPV  420
AVTLATGPHG AERDSANFLE SFCRCLEQLC TIFDSLEAGL PEHGLATAMI ERIFFGPAMS  480
RRVVSSSTAC GDDAGLSDTR ESNVVDLPLK CGYSECSISS NNAMLAKYSL LCSGGSGSYE  540
VELVGCHRLV LKWGPNPLVW VSTWKST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-231875654375GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-46GRAS family protein