PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041800-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 485aa    MW: 53096.4 Da    PI: 7.2092
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041800-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.7e-106186227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      +++ C +++rtG C yG +C+F+H+p
  PSME_00041800-RA 61 GESDCAHYMRTGACGYGMSCRFNHPP 86
                      7889********************97 PP
2zf-CCCH32.71.2e-10113137327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+++ +tG+Ck+G +CkF+H++
  PSME_00041800-RA 113 EKECSHYVKTGQCKFGITCKFHHPQ 137
                       579********************97 PP
3zf-CCCH39.31.1e-12279303327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+f++rtG+CkyG++Ck++H++
  PSME_00041800-RA 279 QPECQFYMRTGYCKYGSTCKYHHPR 303
                       799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.9E-45986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7845987IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-86186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.02E-56386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-46584IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601111138IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5112137IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8113137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868276304IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5276303IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10279303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-6279305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5282303IPR000571Zinc finger, CCCH-type
SuperFamilySSF534742.7E-12364458IPR029058Alpha/Beta hydrolase fold
PfamPF121461.0E-16372481IPR022742Serine aminopeptidase, S33
Gene3DG3DSA:3.40.50.18203.3E-12372468IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEYYGTSSAM PRFLGSAVDP SPPDWNSQHV AADTGLEEAM WQMNLQSHDV AERGSFPERP  60
GESDCAHYMR TGACGYGMSC RFNHPPRRNI SAAVARNRGE YPERPGDPEC QNEKECSHYV  120
KTGQCKFGIT CKFHHPQPVG GSVTIPGPSS YYPTGPSLSI PSPQPYAGGL TTWPVSRTPL  180
MANPYLHSPS TYVPLVISQG MMPVPGWNPF PAQVGSITSR DVGQQAPGTG LFYGPRYQTD  240
GMNPSMQGAL LSYSSRSASM GLPSSNTQME HMFPERHGQP ECQFYMRTGY CKYGSTCKYH  300
HPRDRTIPLT SCALSPLGLP LRSAAIACGG CLKVPIASWW LSSTTVVFFD AAFHCSVGFV  360
AAIHCWALVD SAAAGYRLFS MDYPGFVLSE GFYGYFEELI DDVIEHFSKV RAQSEFSDLP  420
SFIFGQSIGG AVVLKVHLKQ PLSWDGTILV DPMYKIAKEI APPLKVLQVL ELVSHLLSKQ  480
KVVSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1043380.0BT104338.1 Picea glauca clone GQ02809_C21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024188554.11e-100zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ2R4J42e-86C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D6QUK41e-131A0A0D6QUK4_ARACU; Uncharacterized protein
STRINGXP_008812314.12e-95(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-74zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]