PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00040311-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | WRKY | ||||||||
Protein Properties | Length: 424aa MW: 47345.4 Da PI: 5.9796 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 54.5 | 2.4e-17 | 251 | 292 | 18 | 59 |
-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 18 sefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 + +sYYrCt+++C vkk+vers+edp+vv++tYeg+H+h+ PSME_00040311-RA 251 ETKKQSYYRCTYSKCFVKKRVERSSEDPSVVITTYEGQHTHH 292 56678************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.2E-9 | 238 | 293 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.6E-16 | 246 | 294 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.109 | 246 | 294 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-14 | 248 | 294 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-12 | 251 | 292 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MAAPHEQPQP IPKSESSEPE SDSSDAWRLS QQQALFLSSY PTREEKETHS NFPTPSWNTT 60 TNQLSYDTGA VPRSQDRNLY QQAAFTTPRA GGFMFNPSTE MSWNTDIQHH RPADQVLSRS 120 SALMDIDNGL ADFPLIGSFQ EYLQREEEFP DFGHVVRPLS HFPEDHQTRH EAPEEAVADF 180 TQSSAMAATE EAPAGGRSGE TSTVPGTPNS SISSSSSEGH EEYSTGIRSG PSKTEPPSED 240 ISTESKPTEP ETKKQSYYRC TYSKCFVKKR VERSSEDPSV VITTYEGQHT HHSPALLRGS 300 SSGSSDQLAH FAVDHHRTTS PFNTAQSPSF NVQGLRTAVQ VPRTNYYGVG SLQPQVQTQV 360 HDPIHRGSSN LQHQQILRSI QQQHQQQQQH DHSQQQQHQL IHSHQMIDQG LLEDIVPQGM 420 RKNP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ099035 | 7e-85 | FJ099035.2 Pinus taeda isolate 2266 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099036 | 7e-85 | FJ099036.2 Pinus taeda isolate 2273 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099037 | 7e-85 | FJ099037.2 Pinus taeda isolate 2264 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099038 | 7e-85 | FJ099038.2 Pinus taeda isolate 2267 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099039 | 7e-85 | FJ099039.2 Pinus taeda isolate 2265 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099040 | 7e-85 | FJ099040.2 Pinus taeda isolate 2272 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099041 | 7e-85 | FJ099041.2 Pinus taeda isolate 2270 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099042 | 7e-85 | FJ099042.2 Pinus taeda isolate 2275 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099043 | 7e-85 | FJ099043.2 Pinus taeda isolate 2276 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099044 | 7e-85 | FJ099044.2 Pinus taeda isolate 2278 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099045 | 7e-85 | FJ099045.2 Pinus taeda isolate 2271 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099046 | 7e-85 | FJ099046.2 Pinus taeda isolate 2268 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099047 | 7e-85 | FJ099047.2 Pinus taeda isolate 2280 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099048 | 7e-85 | FJ099048.2 Pinus taeda isolate 2279 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099049 | 7e-85 | FJ099049.2 Pinus taeda isolate 2274 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099050 | 7e-85 | FJ099050.2 Pinus taeda isolate 2263 anonymous locus 2_6086_01 genomic sequence. | |||
GenBank | FJ099051 | 7e-85 | FJ099051.2 Pinus taeda isolate 2277 anonymous locus 2_6086_01 genomic sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 6e-16 | WRKY DNA-binding protein 57 |