PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040311-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 424aa    MW: 47345.4 Da    PI: 5.9796
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040311-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.52.4e-172512921859
                       -SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  18 sefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +  +sYYrCt+++C vkk+vers+edp+vv++tYeg+H+h+
  PSME_00040311-RA 251 ETKKQSYYRCTYSKCFVKKRVERSSEDPSVVITTYEGQHTHH 292
                       56678************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.2E-9238293IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-16246294IPR003657WRKY domain
PROSITE profilePS5081117.109246294IPR003657WRKY domain
SuperFamilySSF1182902.35E-14248294IPR003657WRKY domain
PfamPF031061.8E-12251292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAAPHEQPQP IPKSESSEPE SDSSDAWRLS QQQALFLSSY PTREEKETHS NFPTPSWNTT  60
TNQLSYDTGA VPRSQDRNLY QQAAFTTPRA GGFMFNPSTE MSWNTDIQHH RPADQVLSRS  120
SALMDIDNGL ADFPLIGSFQ EYLQREEEFP DFGHVVRPLS HFPEDHQTRH EAPEEAVADF  180
TQSSAMAATE EAPAGGRSGE TSTVPGTPNS SISSSSSEGH EEYSTGIRSG PSKTEPPSED  240
ISTESKPTEP ETKKQSYYRC TYSKCFVKKR VERSSEDPSV VITTYEGQHT HHSPALLRGS  300
SSGSSDQLAH FAVDHHRTTS PFNTAQSPSF NVQGLRTAVQ VPRTNYYGVG SLQPQVQTQV  360
HDPIHRGSSN LQHQQILRSI QQQHQQQQQH DHSQQQQHQL IHSHQMIDQG LLEDIVPQGM  420
RKNP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0990357e-85FJ099035.2 Pinus taeda isolate 2266 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990367e-85FJ099036.2 Pinus taeda isolate 2273 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990377e-85FJ099037.2 Pinus taeda isolate 2264 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990387e-85FJ099038.2 Pinus taeda isolate 2267 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990397e-85FJ099039.2 Pinus taeda isolate 2265 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990407e-85FJ099040.2 Pinus taeda isolate 2272 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990417e-85FJ099041.2 Pinus taeda isolate 2270 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990427e-85FJ099042.2 Pinus taeda isolate 2275 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990437e-85FJ099043.2 Pinus taeda isolate 2276 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990447e-85FJ099044.2 Pinus taeda isolate 2278 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990457e-85FJ099045.2 Pinus taeda isolate 2271 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990467e-85FJ099046.2 Pinus taeda isolate 2268 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990477e-85FJ099047.2 Pinus taeda isolate 2280 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990487e-85FJ099048.2 Pinus taeda isolate 2279 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990497e-85FJ099049.2 Pinus taeda isolate 2274 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990507e-85FJ099050.2 Pinus taeda isolate 2263 anonymous locus 2_6086_01 genomic sequence.
GenBankFJ0990517e-85FJ099051.2 Pinus taeda isolate 2277 anonymous locus 2_6086_01 genomic sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.26e-16WRKY DNA-binding protein 57