PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039882-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 127aa    MW: 14676.9 Da    PI: 9.8665
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039882-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.25e-30219454128
               NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ e+yfFs+rdkky++g+ +nrat++gyWkat kd ++ s k++ +g+kktLvfy grap+g++tdWvmheyrl
  PSME_00039882-RA  21 RDLELYFFSPRDKKYPNGTCTNRATEAGYWKATWKDSKINS-KSSMIGTKKTLVFYGGRAPQGRRTDWVMHEYRL 94 
                       45699************************************.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.3811114IPR003441NAC domain
SuperFamilySSF1019415.1E-311999IPR003441NAC domain
PfamPF023651.5E-152594IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MLQHLTQFLC LFVDKSFLPN RDLELYFFSP RDKKYPNGTC TNRATEAGYW KATWKDSKIN  60
SKSSMIGTKK TLVFYGGRAP QGRRTDWVMH EYRLDETQCE GAAGVQVPCL NWIKFSLSIK  120
KLENGVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2729646144NO APICAL MERISTEM PROTEIN
1ut4_B1e-2729646144NO APICAL MERISTEM PROTEIN
1ut7_A1e-2729646144NO APICAL MERISTEM PROTEIN
1ut7_B1e-2729646144NO APICAL MERISTEM PROTEIN
3swm_A1e-2729649147NAC domain-containing protein 19
3swm_B1e-2729649147NAC domain-containing protein 19
3swm_C1e-2729649147NAC domain-containing protein 19
3swm_D1e-2729649147NAC domain-containing protein 19
3swp_A1e-2729649147NAC domain-containing protein 19
3swp_B1e-2729649147NAC domain-containing protein 19
3swp_C1e-2729649147NAC domain-containing protein 19
3swp_D1e-2729649147NAC domain-containing protein 19
4dul_A1e-2729646144NAC domain-containing protein 19
4dul_B1e-2729646144NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028547959.14e-43NAC domain-containing protein 45 isoform X1
RefseqXP_028547960.14e-43NAC domain-containing protein 45 isoform X2
SwissprotA4VCM02e-37NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A287PZ914e-43A0A287PZ91_HORVV; Uncharacterized protein
STRINGPGSC0003DMT4000183649e-44(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-43NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]