PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039526-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family BES1
Protein Properties Length: 414aa    MW: 43294.9 Da    PI: 8.229
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039526-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822198.91.7e-6121322124
            DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 
                       ++ r ptwkErEnnkrRERrRRaiaakiy+GLR++Gnyklpk++DnneVlkALc+eAGw ve+DGttyrkg+ p+e++e++g+sas+sp+ss+
  PSME_00039526-RA   2 TGSRLPTWKERENNKRRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCNEAGWQVEEDGTTYRKGCPPPERMETGGASASMSPSSSY 94 
                       57899**********************************************************************************999999 PP

            DUF822  95 q.s.......slkssalaspvesysaspksssfpspss 124
                       + s       s+ ss+++sp +sy+asp+sssfpsp  
  PSME_00039526-RA  95 HpSpaasyhaSPASSSFPSPGPSYQASPASSSFPSPGP 132
                       82111111112334445555555555555555555543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.6E-593147IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTGSRLPTWK ERENNKRRER RRRAIAAKIY SGLRMYGNYK LPKHCDNNEV LKALCNEAGW  60
QVEEDGTTYR KGCPPPERME TGGASASMSP SSSYHPSPAA SYHASPASSS FPSPGPSYQA  120
SPASSSFPSP GPSYQDGGYL IPWLKNLGGG GGGGGGVGTV SSGRGLPPIG TSNSAPVTPP  180
LSSPTARGPR AMPDWEALVK MSAAAAAANE NGNHCSGTGG AAVVADDPAA AFCNAVSGWS  240
TQQHHHHHYP FLSAPPSPAP HSHSRREPLD LSNATVDNTK GRWLGGVRVS ASASASMGPS  300
SPTFSLLSPA AQLEHSLGGE RSHFFAPADS RLWTPVGSAM SSPCRTPATG GAVVRVAAAD  360
EFQFECGSVK PWQGERIHEE CSGDMDIASD DLELTLGNSK RRAKAESVAT PMFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-22575372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-22575372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-22575372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-22575372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1029630.0BT102963.1 Picea glauca clone GQ0204_C10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3G6JA110.0A0A3G6JA11_PINTA; BES1/BZR1 homolog protein 4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-33BES1/BZR1 homolog 4