 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00039462-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 363aa MW: 41101.7 Da PI: 6.1876 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00039462-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 162 | 2.2e-50 | 50 | 178 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelv +yLkk +++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r++ra++sgyWkatg++k++l
PSME_00039462-RA 50 LPPGFRFHPTDEELVIHYLKK-ASSTPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPKRAATSGYWKATGTNKPIL 140
79*****************75.66778888.78***************8888999************************************** PP
NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ ++++vg+kk Lvfy gr pkg kt+W+mhey+l
PSME_00039462-RA 141 TStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYHL 178
998888899****************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 363 aa
Download sequence Send
to blast |
MGPTIYNEYN TLLHNHEHLS EFGQFDFFCS NCELMESPAS FSGSHQQPQL PPGFRFHPTD 60
EELVIHYLKK ASSTPLPVTI IAEIDLYKFD PWELPGKATF GEQEWYFFSP RDRKYPNGAR 120
PKRAATSGYW KATGTNKPIL TSTSGGTQKV GVKKALVFYG GRPPKGIKTN WIMHEYHLAD 180
SGARPCSFPN KKGSLRLDDW VLCLIYKKNG HSQRVQGVER DESLSVDETD DPFIEGLLND 240
EAMDGNGNII HSSDLSHNNF SNSNDNNSDC QFEVVTKQEA LAVDNENKFN SLKRTLSLAA 300
FGDEEIHSAK RFNDIYNVNN NVSALLNSMQ PNQTFQQQNF LSALSDSQQN FRLPYIQNMH 360
WSS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 4e-70 | 47 | 214 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 4e-70 | 47 | 214 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 4e-70 | 47 | 214 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 4e-70 | 47 | 214 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 4e-70 | 47 | 214 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 4e-70 | 47 | 214 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 4e-70 | 47 | 214 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 4e-70 | 47 | 214 | 17 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
