PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00039439-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WOX

Protein Properties

Length: 569aa MW: 62673.3 Da PI: 6.2872

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00039439-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.6	8e-17	7	67	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F + p +ee++++ ++l ++ + +V++WFqNr+ + k+ PSME_00039439-RA 7 KSRWNPKPEQVQILEAIFSSgMVSPPREEIKRIRAQLevfgQVGDVNVFYWFQNRKSRSKR 67 89***************99************************************97 PP
2	Wus_type_Homeobox	105.1	4.5e-34	6	68	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a++RW+P+peQ++iLe++++sG+++P++eei+ri+a+Le +G+++d NVfyWFQNrk+R++++ PSME_00039439-RA 6 AKSRWNPKPEQVQILEAIFSSGMVSPPREEIKRIRAQLEVFGQVGDVNVFYWFQNRKSRSKRR 68 689**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.98E-11	3	70	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.997	3	68	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-6	5	70	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-6	5	72	IPR001356	Homeobox domain
CDD	cd00086	0.00263	7	62	No hit	No description
Pfam	PF00046	1.3E-14	7	67	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MNQPKAKSRW NPKPEQVQIL EAIFSSGMVS PPREEIKRIR AQLEVFGQVG DVNVFYWFQN 60 RKSRSKRRPR LPTIQRSKCR TETGTPSSTS PPSSSSTSAR CKTITDLSNS LPSSMHSSIR 120 DQYCSTSAMP VSSLAEHGYN QQVVCEEMHK TSTVQSETIT DPSNCSPNSM NSIIGNQYCF 180 SAATPVSSLS GHQHDMHAVC EEMSKTSRSV LSKTITDLSN SLPSSMHSSI RAQYCSTSAM 240 PVSSFAGHPY DQQVVCQEMP KTSSVQSETI TDPSNCSPNS LNSSIGNQYC FSAATPVSSF 300 SGHQHDMHAV YEEMSRTSTS VLSETITDLS NCSPNSMHSD IGNQYYLSSA VPFSSGHDYD 360 LETLYKEMSN MQAIRAPATA GGQSILNKGT GGVLDGSIIN SNSLITVIIN DVQTAIPSGP 420 INFRDFFGDD TLLLHSSGES VIVNEFGFTN LEHGAMYFSV IEEPLEMMPM THESNLNARV 480 GGSRRIVNHA MEYLELCRMD FGIPKSKSIE KLLEERWCSP LRPKVALNYM SGEHKFLCEL 540 LQALGELDLG MSYKFPQDER DIIISLHLA

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MNQPKAKSRW NPKPEQVQIL EAIFSSGMVS PPREEIKRIR AQLEVFGQVG DVNVFYWFQN  60
RKSRSKRRPR LPTIQRSKCR TETGTPSSTS PPSSSSTSAR CKTITDLSNS LPSSMHSSIR  120
DQYCSTSAMP VSSLAEHGYN QQVVCEEMHK TSTVQSETIT DPSNCSPNSM NSIIGNQYCF  180
SAATPVSSLS GHQHDMHAVC EEMSKTSRSV LSKTITDLSN SLPSSMHSSI RAQYCSTSAM  240
PVSSFAGHPY DQQVVCQEMP KTSSVQSETI TDPSNCSPNS LNSSIGNQYC FSAATPVSSF  300
SGHQHDMHAV YEEMSRTSTS VLSETITDLS NCSPNSMHSD IGNQYYLSSA VPFSSGHDYD  360
LETLYKEMSN MQAIRAPATA GGQSILNKGT GGVLDGSIIN SNSLITVIIN DVQTAIPSGP  420
INFRDFFGDD TLLLHSSGES VIVNEFGFTN LEHGAMYFSV IEEPLEMMPM THESNLNARV  480
GGSRRIVNHA MEYLELCRMD FGIPKSKSIE KLLEERWCSP LRPKVALNYM SGEHKFLCEL  540
LQALGELDLG MSYKFPQDER DIIISLHLA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	4e-27	homeobox-3