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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00039439-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | WOX | ||||||||
Protein Properties | Length: 569aa MW: 62673.3 Da PI: 6.2872 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.6 | 8e-17 | 7 | 67 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F + p +ee++++ ++l ++ + +V++WFqNr+ + k+ PSME_00039439-RA 7 KSRWNPKPEQVQILEAIFSSgMVSPPREEIKRIRAQLevfgQVGDVNVFYWFQNRKSRSKR 67 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 105.1 | 4.5e-34 | 6 | 68 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a++RW+P+peQ++iLe++++sG+++P++eei+ri+a+Le +G+++d NVfyWFQNrk+R++++ PSME_00039439-RA 6 AKSRWNPKPEQVQILEAIFSSGMVSPPREEIKRIRAQLEVFGQVGDVNVFYWFQNRKSRSKRR 68 689**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.98E-11 | 3 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.997 | 3 | 68 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 5 | 70 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-6 | 5 | 72 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00263 | 7 | 62 | No hit | No description |
Pfam | PF00046 | 1.3E-14 | 7 | 67 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MNQPKAKSRW NPKPEQVQIL EAIFSSGMVS PPREEIKRIR AQLEVFGQVG DVNVFYWFQN 60 RKSRSKRRPR LPTIQRSKCR TETGTPSSTS PPSSSSTSAR CKTITDLSNS LPSSMHSSIR 120 DQYCSTSAMP VSSLAEHGYN QQVVCEEMHK TSTVQSETIT DPSNCSPNSM NSIIGNQYCF 180 SAATPVSSLS GHQHDMHAVC EEMSKTSRSV LSKTITDLSN SLPSSMHSSI RAQYCSTSAM 240 PVSSFAGHPY DQQVVCQEMP KTSSVQSETI TDPSNCSPNS LNSSIGNQYC FSAATPVSSF 300 SGHQHDMHAV YEEMSRTSTS VLSETITDLS NCSPNSMHSD IGNQYYLSSA VPFSSGHDYD 360 LETLYKEMSN MQAIRAPATA GGQSILNKGT GGVLDGSIIN SNSLITVIIN DVQTAIPSGP 420 INFRDFFGDD TLLLHSSGES VIVNEFGFTN LEHGAMYFSV IEEPLEMMPM THESNLNARV 480 GGSRRIVNHA MEYLELCRMD FGIPKSKSIE KLLEERWCSP LRPKVALNYM SGEHKFLCEL 540 LQALGELDLG MSYKFPQDER DIIISLHLA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 4e-27 | homeobox-3 |