PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039439-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 569aa    MW: 62673.3 Da    PI: 6.2872
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039439-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.68e-17767257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+++++eq+++Le+ F +    p +ee++++ ++l    ++ + +V++WFqNr+ + k+
  PSME_00039439-RA  7 KSRWNPKPEQVQILEAIFSSgMVSPPREEIKRIRAQLevfgQVGDVNVFYWFQNRKSRSKR 67
                      89*****************99**************************************97 PP

2Wus_type_Homeobox105.14.5e-34668264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a++RW+P+peQ++iLe++++sG+++P++eei+ri+a+Le +G+++d NVfyWFQNrk+R++++
   PSME_00039439-RA  6 AKSRWNPKPEQVQILEAIFSSGMVSPPREEIKRIRAQLEVFGQVGDVNVFYWFQNRKSRSKRR 68
                       689**********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.98E-11370IPR009057Homeodomain-like
PROSITE profilePS5007110.997368IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-6570IPR009057Homeodomain-like
SMARTSM003891.6E-6572IPR001356Homeobox domain
CDDcd000860.00263762No hitNo description
PfamPF000461.3E-14767IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MNQPKAKSRW NPKPEQVQIL EAIFSSGMVS PPREEIKRIR AQLEVFGQVG DVNVFYWFQN  60
RKSRSKRRPR LPTIQRSKCR TETGTPSSTS PPSSSSTSAR CKTITDLSNS LPSSMHSSIR  120
DQYCSTSAMP VSSLAEHGYN QQVVCEEMHK TSTVQSETIT DPSNCSPNSM NSIIGNQYCF  180
SAATPVSSLS GHQHDMHAVC EEMSKTSRSV LSKTITDLSN SLPSSMHSSI RAQYCSTSAM  240
PVSSFAGHPY DQQVVCQEMP KTSSVQSETI TDPSNCSPNS LNSSIGNQYC FSAATPVSSF  300
SGHQHDMHAV YEEMSRTSTS VLSETITDLS NCSPNSMHSD IGNQYYLSSA VPFSSGHDYD  360
LETLYKEMSN MQAIRAPATA GGQSILNKGT GGVLDGSIIN SNSLITVIIN DVQTAIPSGP  420
INFRDFFGDD TLLLHSSGES VIVNEFGFTN LEHGAMYFSV IEEPLEMMPM THESNLNARV  480
GGSRRIVNHA MEYLELCRMD FGIPKSKSIE KLLEERWCSP LRPKVALNYM SGEHKFLCEL  540
LQALGELDLG MSYKFPQDER DIIISLHLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-27homeobox-3